Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS08570 and ABZR87_RS08575 are separated by 292 nucleotidesABZR87_RS08575 and ABZR87_RS08580 are separated by 30 nucleotidesABZR87_RS08580 and ABZR87_RS08585 are separated by 76 nucleotidesABZR87_RS08585 and ABZR87_RS08590 are separated by 258 nucleotides ABZR87_RS08570: ABZR87_RS08570 - rubredoxin, at 1,818,719 to 1,818,901 _RS08570 ABZR87_RS08575: ABZR87_RS08575 - response regulator, at 1,819,194 to 1,819,691 _RS08575 ABZR87_RS08580: ABZR87_RS08580 - response regulator, at 1,819,722 to 1,820,090 _RS08580 ABZR87_RS08585: ABZR87_RS08585 - chemotaxis protein CheW, at 1,820,167 to 1,820,712 _RS08585 ABZR87_RS08590: ABZR87_RS08590 - methyl-accepting chemotaxis protein, at 1,820,971 to 1,823,208 _RS08590
Group Condition ABZR87_RS08570 ABZR87_RS08575 ABZR87_RS08580 ABZR87_RS08585 ABZR87_RS08590
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. -0.3 -0.6 -1.6 -0.7
soil soil EcoFAB sample 1; outgrowth in LB N.D. -0.5 -0.3 -0.9 -1.1
soil soil EcoFAB sample 2; outgrowth in LB N.D. +0.1 -0.5 -1.7 -0.6
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. -0.6 -0.4 -1.0 -0.6
phage Ra3_0.1 N.D. -0.3 -2.7 +0.8 -0.2
carbon source L-Glutamic (C) N.D. -0.7 -0.5 -1.1 -0.1
carbon source Sebacic (C) N.D. -1.4 -1.2 +0.2 +0.1
root root EcoFAB sample 2; outgrowth in LB N.D. -0.8 -0.0 -1.2 -0.2
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) N.D. -0.6 -0.6 -0.6 -0.4
soil soil sample 9; outgrowth in LB N.D. -0.4 -0.2 -1.0 -0.5
soil soil sample 1; outgrowth in LB N.D. -0.1 +0.2 -2.0 -0.1
phage Ra3_0.01 N.D. -0.2 -1.4 +0.2 -0.6
soil soil sample 8; outgrowth in LB N.D. +0.1 -0.1 -1.3 -0.6
phage Ra1_0.01 N.D. -0.3 -2.0 +0.8 -0.4
carbon source 4-Hydroxybenzoic Acid (C) N.D. -0.4 -0.7 +0.5 -0.7
phage Ra1_0.1 N.D. +0.8 -3.8 +1.5 +0.6
soil soil sample 4; outgrowth in LB N.D. +0.5 +0.6 -0.8 -0.6
phage Ra3_1 N.D. +0.7 -4.5 +2.9 +0.9
rhizosphere rhizosphere sample 4; outgrowth in LB N.D. +0.4 +1.4 -1.2 +0.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. +0.1 +0.3 +1.3 -0.4
carbon source Octanoic (C) N.D. +0.1 -0.4 +1.7 -0.0
root root sample 5; outgrowth in LB N.D. -0.1 +1.8 -0.5 +0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.3 +0.8 -0.2 +1.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.5 +0.5 +0.2 +0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.8 +0.6 +0.3 +0.8
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. +0.6 +1.6 +0.2 +0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.2 +2.0 +0.8 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +1.0 +1.0 +0.4 +1.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.7 +1.8 +0.7 +0.9
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. +1.0 +1.9 +0.6 +1.0
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