Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABZR87_RS08565	ABZR87_RS08570	ABZR87_RS08575	ABZR87_RS08580	ABZR87_RS08585
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	N.D.	-0.3	-0.6	-1.6
carbon source	Sebacic (C)	N.D.	N.D.	-1.4	-1.2	+0.2
phage	Ra3_0.1	N.D.	N.D.	-0.3	-2.7	+0.8
carbon source	L-Glutamic (C)	N.D.	N.D.	-0.7	-0.5	-1.1
soil	soil EcoFAB sample 2; outgrowth in LB	N.D.	N.D.	+0.1	-0.5	-1.7
root	root EcoFAB sample 2; outgrowth in LB	N.D.	N.D.	-0.8	-0.0	-1.2
rhizosphere	rhizosphere sample 9; outgrowth in LB	N.D.	N.D.	-0.6	-0.4	-1.0
soil	soil sample 1; outgrowth in LB	N.D.	N.D.	-0.1	+0.2	-2.0
in planta	Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish)	N.D.	N.D.	-0.6	-0.6	-0.6
soil	soil EcoFAB sample 1; outgrowth in LB	N.D.	N.D.	-0.5	-0.3	-0.9
phage	Ra1_0.01	N.D.	N.D.	-0.3	-2.0	+0.8
phage	Ra1_0.1	N.D.	N.D.	+0.8	-3.8	+1.5
phage	Ra3_0.01	N.D.	N.D.	-0.2	-1.4	+0.2
nitrogen source	nitrogen source nitrite 0.5mM	N.D.	N.D.	+0.0	+0.3	-1.7
phage	Ra3_1	N.D.	N.D.	+0.7	-4.5	+2.9
nitrogen source	nitrogen source nitrate 5mM	N.D.	N.D.	+0.2	+0.3	-1.2
carbon source	Protocatechuic Acid (C)	N.D.	N.D.	+0.5	+0.1	-1.2
soil	soil sample 4; outgrowth in LB	N.D.	N.D.	+0.5	+0.6	-0.8
rhizosphere	rhizosphere sample 4; outgrowth in LB	N.D.	N.D.	+0.4	+1.4	-1.2
root	root sample 5; outgrowth in LB	N.D.	N.D.	-0.1	+1.8	-0.5
carbon source	butyrate (C)	N.D.	N.D.	+0.7	-0.3	+0.9
carbon source	Octanoic (C)	N.D.	N.D.	+0.1	-0.4	+1.7
carbon source	Valeric (C)	N.D.	N.D.	+0.5	+0.4	+0.8
no_plant_rhizosphere	no_plant_rhizosphere sample 2; outgrowth in LB	N.D.	N.D.	+0.1	+0.3	+1.3
in planta	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	N.D.	N.D.	+0.8	+0.6	+0.3
in planta	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	N.D.	N.D.	+1.0	+1.0	+0.4
no_plant_soil	no_plant_soil sample 3; outgrowth in LB	N.D.	N.D.	+0.6	+1.6	+0.2
no plant control	Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	N.D.	N.D.	+0.2	+2.0	+0.8
in planta	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	N.D.	N.D.	+0.7	+1.8	+0.7
no_plant_soil	no_plant_soil sample 2; outgrowth in LB	N.D.	N.D.	+1.0	+1.9	+0.6