Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS08515 and ABZR87_RS08520 are separated by 149 nucleotidesABZR87_RS08520 and ABZR87_RS08525 are separated by 363 nucleotidesABZR87_RS08525 and ABZR87_RS08530 are separated by 131 nucleotidesABZR87_RS08530 and ABZR87_RS08535 are separated by 515 nucleotides ABZR87_RS08515: ABZR87_RS08515 - type II and III secretion system protein family protein, at 1,807,820 to 1,809,712 _RS08515 ABZR87_RS08520: ABZR87_RS08520 - Flp pilus assembly protein CpaB, at 1,809,862 to 1,810,719 _RS08520 ABZR87_RS08525: ABZR87_RS08525 - prepilin peptidase, at 1,811,083 to 1,811,616 _RS08525 ABZR87_RS08530: ABZR87_RS08530 - Flp family type IVb pilin, at 1,811,748 to 1,811,924 _RS08530 ABZR87_RS08535: ABZR87_RS08535 - Flp family type IVb pilin, at 1,812,440 to 1,812,655 _RS08535
Group Condition ABZR87_RS08515 ABZR87_RS08520 ABZR87_RS08525 ABZR87_RS08530 ABZR87_RS08535
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.5 +0.1 -3.2 N.D.
nitrogen source nitrogen source nitrite 0.5mM -0.3 +0.0 +0.5 -3.0 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.2 +0.4 -3.3 N.D.
soil soil EcoFAB sample 1; outgrowth in LB -0.3 -0.7 +0.3 -1.5 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.2 -1.0 -0.9 N.D.
rhizosphere rhizosphere sample 9; outgrowth in LB +0.2 -0.8 -0.6 -0.5 N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 +0.4 -1.3 -1.1 N.D.
carbon source Sebacic (C) +0.3 -1.0 -0.2 +0.1 N.D.
soil soil sample 6; outgrowth in LB -0.5 +0.2 -0.6 -0.0 N.D.
carbon source Octanoic (C) +0.5 -0.3 -0.3 -0.3 N.D.
root root sample 5; outgrowth in LB -0.2 +0.9 -0.3 -0.9 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 -0.1 +0.5 -0.5 N.D.
nitrogen source nitrogen source nitrite 1mM -0.3 -0.3 +0.5 -0.4 N.D.
carbon source 3-Hydroxypropionate (C) -0.2 +0.6 -0.6 -0.1 N.D.
nitrogen source nitrogen source nitrite 0.5mM -0.8 +0.3 +0.3 -0.1 N.D.
nitrogen source nitrogen source nitrate 5mM -0.7 -0.3 +0.1 +0.8 N.D.
micoeukaryotes C.elegans, mixed culture-1 +0.2 +0.4 +0.1 -0.7 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.7 +0.4 -0.5 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 +0.5 -0.3 -0.5 N.D.
carbon source succinate (C) +0.3 +0.1 -0.5 +0.4 N.D.
carbon source acetate (C) +0.2 +0.3 -0.8 +0.9 N.D.
nitrogen source nitrogen source nitrate 20mM -0.5 -0.1 +0.6 +0.5 N.D.
root root EcoFAB sample 2; outgrowth in LB -0.0 +0.0 -0.4 +1.1 N.D.
nitrogen source nitrogen source nitrate 5mM -0.2 +0.4 +0.6 +0.3 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.1 +0.4 -0.2 +1.0 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.0 +0.5 -0.1 +0.8 N.D.
carbon source acetate (C) +0.3 +0.5 -0.4 +0.8 N.D.
rhizosphere rhizosphere sample 3; outgrowth in LB +0.2 +0.0 +0.6 +0.6 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.0 +1.4 -0.1 N.D.
micoeukaryotes C.elegans, mixed culture-2 +0.6 +0.6 +0.3 +0.0 N.D.
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