Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS08405 and ABZR87_RS08410 are separated by 90 nucleotidesABZR87_RS08410 and ABZR87_RS08415 are separated by 73 nucleotidesABZR87_RS08415 and ABZR87_RS08420 are separated by 445 nucleotidesABZR87_RS08420 and ABZR87_RS08425 are separated by 394 nucleotides ABZR87_RS08405: ABZR87_RS08405 - slipin family protein, at 1,787,299 to 1,788,186 _RS08405 ABZR87_RS08410: ABZR87_RS08410 - hypothetical protein, at 1,788,277 to 1,788,534 _RS08410 ABZR87_RS08415: ABZR87_RS08415 - DUF3309 family protein, at 1,788,608 to 1,788,766 _RS08415 ABZR87_RS08420: ABZR87_RS08420 - CsbD family protein, at 1,789,212 to 1,789,394 _RS08420 ABZR87_RS08425: ABZR87_RS08425 - PRC-barrel domain-containing protein, at 1,789,789 to 1,790,250 _RS08425
Group Condition ABZR87_RS08405 ABZR87_RS08410 ABZR87_RS08415 ABZR87_RS08420 ABZR87_RS08425
carbon source Sebacic (C) -1.1 +0.6 -1.1 N.D. -0.5
carbon source 4-Hydroxybenzoic Acid (C) -0.3 -1.3 -0.2 N.D. +0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.6 -1.4 -0.0 N.D. +0.3
rhizosphere rhizosphere sample 7; outgrowth in LB -0.4 -0.7 -0.0 N.D. +0.1
carbon source Protocatechuic Acid (C) -0.1 -1.0 +0.1 N.D. +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.1 -0.8 +0.1 N.D. -0.2
carbon source Protocatechuic Acid (C) -0.3 -0.5 -0.2 N.D. +0.2
nitrogen source nitrogen source nitrate 5mM +0.3 -0.7 -0.5 N.D. +0.1
carbon source Octanoic (C) -0.5 -0.4 +0.2 N.D. -0.0
root root sample 5; outgrowth in LB +0.3 -0.8 -0.2 N.D. +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB -0.1 -0.3 -0.4 N.D. +0.3
soil soil sample 3; outgrowth in LB -0.3 -0.5 -0.0 N.D. +0.3
carbon source Carbon source D-Glucose 10 mM -0.2 -0.6 +0.4 N.D. -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.3 -0.5 -0.2 N.D. +0.1
soil soil EcoFAB sample 2; outgrowth in LB +0.1 -0.7 +0.2 N.D. +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.3 +0.5 N.D. -0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.3 +0.2 N.D. -0.6
rhizosphere rhizosphere sample 9; outgrowth in LB -0.9 +0.0 +0.6 N.D. +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.7 +0.3 N.D. +0.2
rhizosphere rhizosphere sample 3; outgrowth in LB -0.1 +0.7 +0.2 N.D. -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.4 -0.2 N.D. +0.6
soil soil EcoFAB sample 1; outgrowth in LB +0.1 +0.8 -0.3 N.D. -0.2
carbon source Azelaic (C) -0.3 +0.6 +0.1 N.D. +0.2
nitrogen source nitrogen source nitrate 20mM +0.2 +0.5 -0.3 N.D. +0.3
nitrogen source nitrogen source nitrate 5mM +0.7 +0.3 -0.1 N.D. -0.1
root root sample 6; outgrowth in LB +0.4 -0.1 +0.6 N.D. -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB +0.2 +0.6 +0.2 N.D. -0.2
soil soil sample 4; outgrowth in LB +0.2 +0.7 +0.2 N.D. -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 +0.3 +0.6 N.D. -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +1.0 +0.2 N.D. -0.0
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ABZR87_RS08405
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ABZR87_RS08410
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