Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS08390 and ABZR87_RS08395 are separated by 159 nucleotidesABZR87_RS08395 and ABZR87_RS08400 are separated by 753 nucleotidesABZR87_RS08400 and ABZR87_RS08405 are separated by 88 nucleotidesABZR87_RS08405 and ABZR87_RS08410 are separated by 90 nucleotides ABZR87_RS08390: ABZR87_RS08390 - LysR family transcriptional regulator, at 1,783,905 to 1,784,867 _RS08390 ABZR87_RS08395: ABZR87_RS08395 - divalent metal cation transporter, at 1,785,027 to 1,786,316 _RS08395 ABZR87_RS08400: ABZR87_RS08400 - glycine zipper 2TM domain-containing protein, at 1,787,070 to 1,787,210 _RS08400 ABZR87_RS08405: ABZR87_RS08405 - slipin family protein, at 1,787,299 to 1,788,186 _RS08405 ABZR87_RS08410: ABZR87_RS08410 - hypothetical protein, at 1,788,277 to 1,788,534 _RS08410
Group Condition ABZR87_RS08390 ABZR87_RS08395 ABZR87_RS08400 ABZR87_RS08405 ABZR87_RS08410
soil soil EcoFAB sample 1; outgrowth in LB +0.2 +0.0 -5.1 +0.1 +0.8
rhizosphere rhizosphere sample 1; outgrowth in LB -0.5 -0.2 -1.6 -0.1 -0.3
rhizosphere rhizosphere sample 7; outgrowth in LB +0.0 +0.0 -1.6 -0.4 -0.7
rhizosphere rhizosphere sample 9; outgrowth in LB -0.2 +0.0 -1.0 -0.9 +0.0
carbon source Octanoic (C) -0.2 -0.6 -0.3 -0.5 -0.4
carbon source Protocatechuic Acid (C) -0.3 -0.1 +0.0 -0.1 -1.0
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.0 +0.2 +0.4 -0.6 -1.4
carbon source adipate (C) -0.0 -0.1 -1.0 +0.2 -0.4
carbon source 4-Hydroxybenzoic Acid (C) -0.2 -0.0 +0.5 -0.3 -1.3
rhizosphere rhizosphere sample 4; outgrowth in LB +0.1 +0.2 -0.7 -0.4 -0.3
rhizosphere rhizosphere sample 8; outgrowth in LB -0.0 +0.2 -0.6 +0.0 -0.7
carbon source Protocatechuic Acid (C) +0.1 +0.1 -0.3 -0.3 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.3 -0.5 +0.0 -0.7
root root sample 5; outgrowth in LB -0.4 +0.2 -0.1 +0.3 -0.8
carbon source Azelaic (C) -0.2 +0.0 -0.8 -0.3 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.0 -1.0 +0.1 +0.2
carbon source Sebacic (C) +0.4 +0.1 -0.5 -1.1 +0.6
carbon source propionate (C) -0.1 -0.1 -0.8 +0.1 +0.4
carbon source Carbon source D-Glucose 10 mM -0.1 +0.1 +0.6 -0.2 -0.6
rhizosphere rhizosphere sample 2; outgrowth in LB -0.1 -0.2 -0.9 +0.2 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.2 -1.2 -0.1 +0.6
carbon source Octanoic (C) -0.3 -0.4 +1.2 -0.1 -0.5
nitrogen source nitrogen source nitrate 5mM +0.1 -0.0 -1.1 +0.7 +0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.5 -0.7 +0.0 +0.3
nitrogen source nitrogen source nitrate 5mM +0.0 +0.4 +0.4 +0.3 -0.7
nitrogen source nitrogen source nitrite 0.5mM -0.7 +0.4 +0.6 +0.3 -0.2
carbon source Valeric (C) +0.1 -0.3 +0.6 +0.4 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.1 +0.1 +0.8 +0.2 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.1 +0.2 +0.6 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.1 +0.6 +0.3 +1.0
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ABZR87_RS08390
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ABZR87_RS08395
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