Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS08385 and ABZR87_RS08390 are separated by 137 nucleotidesABZR87_RS08390 and ABZR87_RS08395 are separated by 159 nucleotidesABZR87_RS08395 and ABZR87_RS08400 are separated by 753 nucleotidesABZR87_RS08400 and ABZR87_RS08405 are separated by 88 nucleotides ABZR87_RS08385: ABZR87_RS08385 - SDR family NAD(P)-dependent oxidoreductase, at 1,783,033 to 1,783,767 _RS08385 ABZR87_RS08390: ABZR87_RS08390 - LysR family transcriptional regulator, at 1,783,905 to 1,784,867 _RS08390 ABZR87_RS08395: ABZR87_RS08395 - divalent metal cation transporter, at 1,785,027 to 1,786,316 _RS08395 ABZR87_RS08400: ABZR87_RS08400 - glycine zipper 2TM domain-containing protein, at 1,787,070 to 1,787,210 _RS08400 ABZR87_RS08405: ABZR87_RS08405 - slipin family protein, at 1,787,299 to 1,788,186 _RS08405
Group Condition ABZR87_RS08385 ABZR87_RS08390 ABZR87_RS08395 ABZR87_RS08400 ABZR87_RS08405
soil soil EcoFAB sample 1; outgrowth in LB -0.6 +0.2 +0.0 -5.1 +0.1
rhizosphere rhizosphere sample 9; outgrowth in LB -0.2 -0.2 +0.0 -1.0 -0.9
rhizosphere rhizosphere sample 1; outgrowth in LB +0.5 -0.5 -0.2 -1.6 -0.1
carbon source Azelaic (C) -0.7 -0.2 +0.0 -0.8 -0.3
rhizosphere rhizosphere sample 7; outgrowth in LB +0.1 +0.0 +0.0 -1.6 -0.4
carbon source Octanoic (C) +0.1 -0.2 -0.6 -0.3 -0.5
carbon source Protocatechuic Acid (C) -0.9 -0.3 -0.1 +0.0 -0.1
rhizosphere rhizosphere sample 4; outgrowth in LB -0.2 +0.1 +0.2 -0.7 -0.4
soil soil EcoFAB sample 2; outgrowth in LB -0.7 -0.1 +0.1 -0.4 +0.1
carbon source adipate (C) -0.1 -0.0 -0.1 -1.0 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.1 -0.0 -1.0 +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB +0.0 -0.1 -0.2 -0.9 +0.2
carbon source Sebacic (C) +0.4 +0.4 +0.1 -0.5 -1.1
root root sample 4; outgrowth in LB -0.7 +0.3 +0.1 -0.2 -0.3
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.3 -0.3 +0.1 +0.2 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.2 -0.0 -0.8 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.2 +0.2 -1.2 -0.1
nitrogen source nitrogen source nitrate 5mM -0.1 +0.1 -0.0 -1.1 +0.7
root root sample 5; outgrowth in LB -0.4 -0.4 +0.2 -0.1 +0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.2 +0.5 -0.7 +0.0
carbon source L-Glutamic (C) +0.5 +0.0 -0.3 -0.4 -0.1
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.2 -0.0 +0.5 -0.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.1 +0.0 +0.2 +0.4 -0.6
nitrogen source nitrogen source nitrite 0.5mM -0.2 -0.7 +0.4 +0.6 +0.3
carbon source Octanoic (C) +0.1 -0.3 -0.4 +1.2 -0.1
carbon source Valeric (C) -0.2 +0.1 -0.3 +0.6 +0.4
nitrogen source nitrogen source nitrate 5mM -0.4 +0.0 +0.4 +0.4 +0.3
root root sample 6; outgrowth in LB -0.3 +0.1 +0.2 +0.4 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.2 +0.1 +0.2 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 -0.0 +0.1 +0.6 +0.3
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ABZR87_RS08385
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ABZR87_RS08390
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ABZR87_RS08405
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