Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS08350 and ABZR87_RS08355 are separated by 24 nucleotidesABZR87_RS08355 and ABZR87_RS08360 are separated by 245 nucleotidesABZR87_RS08360 and ABZR87_RS08365 are separated by 103 nucleotidesABZR87_RS08365 and ABZR87_RS08370 are separated by 413 nucleotides ABZR87_RS08350: ABZR87_RS08350 - hypothetical protein, at 1,775,869 to 1,777,131 _RS08350 ABZR87_RS08355: ABZR87_RS08355 - GGDEF domain-containing protein, at 1,777,156 to 1,778,658 _RS08355 ABZR87_RS08360: ABZR87_RS08360 - NmrA family NAD(P)-binding protein, at 1,778,904 to 1,779,767 _RS08360 ABZR87_RS08365: ABZR87_RS08365 - LysR family transcriptional regulator, at 1,779,871 to 1,780,770 _RS08365 ABZR87_RS08370: ABZR87_RS08370 - nuclear transport factor 2 family protein, at 1,781,184 to 1,781,651 _RS08370
Group Condition ABZR87_RS08350 ABZR87_RS08355 ABZR87_RS08360 ABZR87_RS08365 ABZR87_RS08370
phage Ra1_0.1 -0.2 -0.4 +0.1 -0.3 -0.4
root root sample 5; outgrowth in LB -0.2 -0.2 -0.1 +0.3 -0.7
nitrogen source nitrogen source nitrate 5mM -0.1 -0.3 -0.2 -0.0 +0.2
carbon source Heptanoic (C) -0.0 +0.2 -0.3 -0.4 +0.2
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.2 -0.2 +0.4 -0.3 -0.1
carbon source propionate (C) -0.2 +0.2 -0.1 +0.2 -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.1 +0.1 +0.5 -0.3 -0.2
carbon source Octanoic (C) -0.3 -0.3 +0.5 +0.2 +0.2
carbon source Protocatechuic Acid (C) +0.1 -0.1 -0.2 +0.3 +0.3
root root sample 4; outgrowth in LB -0.1 +0.2 +0.2 +0.4 -0.3
carbon source Sebacic (C) -0.1 -0.4 +0.2 +0.4 +0.3
soil soil sample 1; outgrowth in LB +0.1 -0.2 +0.4 -0.2 +0.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.1 -0.1 +0.8 -0.3 -0.0
rhizosphere rhizosphere sample 8; outgrowth in LB -0.1 +0.1 +0.3 +0.4 -0.0
nitrogen source nitrogen source nitrite 0.5mM +0.2 +0.3 -0.1 +0.2 +0.1
carbon source 4-Hydroxybenzoic Acid (C) -0.3 +0.3 -0.0 +0.3 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.0 -0.1 +0.2 +0.3
carbon source Lauric (C) -0.1 +0.3 +0.2 +0.3 +0.2
soil soil EcoFAB sample 1; outgrowth in LB +0.1 -0.4 +0.8 +0.3 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 +0.2 +0.1 -0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.4 +0.4 -0.0 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.2 +0.7 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.4 +0.2 +0.2 -0.2
root root EcoFAB sample 1; outgrowth in LB -0.1 -0.0 +0.8 +0.4 -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.2 +0.0 +1.1 +0.1 -0.4
root root EcoFAB sample 2; outgrowth in LB -0.1 +0.2 +0.7 +0.7 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.0 +0.1 +0.8 -0.0 +0.3
soil soil EcoFAB sample 2; outgrowth in LB +0.1 +0.2 +0.6 +0.3 +0.1
carbon source Octanoic (C) +0.2 +0.2 +0.7 +0.5 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.4 -0.0 +1.3 +0.4
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ABZR87_RS08350
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ABZR87_RS08355
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ABZR87_RS08365
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ABZR87_RS08370
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