Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS08010 and ABZR87_RS08015 are separated by 63 nucleotidesABZR87_RS08015 and ABZR87_RS08020 are separated by 105 nucleotidesABZR87_RS08020 and ABZR87_RS08025 are separated by 20 nucleotidesABZR87_RS08025 and ABZR87_RS08030 overlap by 8 nucleotides ABZR87_RS08010: ABZR87_RS08010 - pilin, at 1,702,570 to 1,703,073 _RS08010 ABZR87_RS08015: ABZR87_RS08015 - cyclic pyranopterin monophosphate synthase MoaC, at 1,703,137 to 1,703,613 _RS08015 ABZR87_RS08020: ABZR87_RS08020 - M48 family metalloprotease, at 1,703,719 to 1,705,422 _RS08020 ABZR87_RS08025: ABZR87_RS08025 - DUF2946 family protein, at 1,705,443 to 1,706,024 _RS08025 ABZR87_RS08030: ABZR87_RS08030 - alpha/beta fold hydrolase, at 1,706,017 to 1,707,093 _RS08030
Group Condition ABZR87_RS08010 ABZR87_RS08015 ABZR87_RS08020 ABZR87_RS08025 ABZR87_RS08030
carbon source Octanoic (C) -0.4 +0.0 -0.4 -3.3 -1.0
nitrogen source nitrogen source nitrate 20mM +0.1 -3.4 -0.1 -0.6 +0.1
nitrogen source nitrogen source nitrate 20mM +0.2 -3.1 -0.0 -0.3 +0.1
nitrogen source nitrogen source nitrate 5mM -0.1 -3.1 -0.1 +0.2 +0.1
carbon source Sebacic (C) +0.0 -0.9 -0.1 -1.5 -0.4
carbon source Octanoic (C) -0.0 +0.1 -0.8 -1.5 -0.6
carbon source Sebacic (C) -0.2 -0.7 +0.0 -1.2 -0.7
carbon source Azelaic (C) -0.3 -0.3 -0.3 -1.2 -0.5
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -2.0 +0.1 -0.0 -0.4
nitrogen source nitrogen source nitrate 5mM +0.1 -2.4 +0.1 -0.1 -0.3
carbon source Heptanoic (C) -0.1 -0.6 -0.1 -1.0 -0.5
carbon source Lauric (C) -0.1 -0.3 -0.3 -1.0 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.1 -1.3 -0.1 -0.6 -0.1
soil soil EcoFAB sample 2; outgrowth in LB +0.0 -1.3 -0.1 -0.4 -0.0
carbon source Heptanoic (C) +0.2 -0.7 -0.0 -0.7 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -1.2 -0.1 -0.7 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -1.5 +0.0 -0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -1.3 -0.1 -0.3 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.2 -1.4 -0.3 +0.4 -0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.1 -1.6 -0.1 +0.2 -0.2
carbon source butyrate (C) -0.0 +0.1 -0.1 -1.2 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -1.1 -0.0 -0.3 +0.1
soil soil EcoFAB sample 1; outgrowth in LB -0.0 -1.3 -0.0 +0.4 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.1 -1.3 -0.3 +0.3 -0.1
rhizosphere rhizosphere sample 7; outgrowth in LB +0.2 -0.5 -0.3 -0.8 +0.1
root root EcoFAB sample 1; outgrowth in LB +0.1 -0.9 -0.3 +0.3 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.8 -0.1 +0.6 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -1.1 +0.0 +0.5 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.8 +0.1 -0.4 +0.5
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.4 -0.9 -0.0 -0.2 +0.3
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