Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS07975 and ABZR87_RS07980 are separated by 66 nucleotidesABZR87_RS07980 and ABZR87_RS07985 are separated by 94 nucleotidesABZR87_RS07985 and ABZR87_RS07990 are separated by 156 nucleotidesABZR87_RS07990 and ABZR87_RS07995 are separated by 185 nucleotides ABZR87_RS07975: ABZR87_RS07975 - DUF2889 domain-containing protein, at 1,695,444 to 1,696,070 _RS07975 ABZR87_RS07980: ABZR87_RS07980 - ADP-forming succinate--CoA ligase subunit beta, at 1,696,137 to 1,697,303 _RS07980 ABZR87_RS07985: ABZR87_RS07985 - succinate--CoA ligase subunit alpha, at 1,697,398 to 1,698,279 _RS07985 ABZR87_RS07990: ABZR87_RS07990 - TerC family protein, at 1,698,436 to 1,699,131 _RS07990 ABZR87_RS07995: ABZR87_RS07995 - pilin, at 1,699,317 to 1,699,838 _RS07995
Group Condition ABZR87_RS07975 ABZR87_RS07980 ABZR87_RS07985 ABZR87_RS07990 ABZR87_RS07995
carbon source Sebacic (C) -1.5 N.D. N.D. -0.8 -0.3
soil soil sample 8; outgrowth in LB -0.4 N.D. N.D. -0.6 -0.2
soil soil sample 3; outgrowth in LB -0.9 N.D. N.D. +0.1 -0.2
soil soil EcoFAB sample 2; outgrowth in LB -0.4 N.D. N.D. -0.5 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.3 N.D. N.D. -0.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 N.D. N.D. -0.6 +0.0
rhizosphere rhizosphere sample 9; outgrowth in LB -0.4 N.D. N.D. -0.4 +0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.6 N.D. N.D. +0.0 -0.2
rhizosphere rhizosphere sample 1; outgrowth in LB +0.0 N.D. N.D. -0.7 +0.1
carbon source Dodecandioic (C) +0.1 N.D. N.D. -0.9 +0.2
rhizosphere rhizosphere sample 3; outgrowth in LB -1.2 N.D. N.D. +0.5 +0.2
nitrogen source nitrogen source nitrate 20mM -0.8 N.D. N.D. +0.2 +0.1
carbon source Heptanoic (C) -0.7 N.D. N.D. +0.2 +0.1
carbon source Octanoic (C) -0.7 N.D. N.D. +0.2 +0.2
carbon source Glycerol (C) +0.3 N.D. N.D. -0.4 -0.2
phage Ra3_0.1 -0.7 N.D. N.D. +0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 N.D. N.D. +0.5 -0.2
soil soil EcoFAB sample 1; outgrowth in LB +0.4 N.D. N.D. -0.3 -0.1
phage Ra1_0.1 -0.6 N.D. N.D. +0.1 +0.5
carbon source Lauric (C) -0.4 N.D. N.D. +0.4 +0.1
nitrogen source nitrogen source nitrite 1mM -0.6 N.D. N.D. +0.5 +0.1
root root sample 6; outgrowth in LB +0.5 N.D. N.D. -0.4 +0.1
root root EcoFAB sample 1; outgrowth in LB +0.6 N.D. N.D. -0.2 -0.1
phage Ra1_0.01 +0.4 N.D. N.D. -0.2 +0.3
phage Ra3_1 -0.6 N.D. N.D. +0.8 +0.4
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.3 N.D. N.D. +0.4 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 N.D. N.D. -0.0 +0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.9 N.D. N.D. -0.4 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.0 N.D. N.D. -0.0 +0.3
carbon source Octanoic (C) +0.6 N.D. N.D. +0.8 +0.3
remove
ABZR87_RS07975
plot		 remove
ABZR87_RS07980
plot		 remove
ABZR87_RS07985		 remove
ABZR87_RS07990
plot		 remove
ABZR87_RS07995
plot