Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS07965 and ABZR87_RS07970 are separated by 94 nucleotidesABZR87_RS07970 and ABZR87_RS07975 are separated by 291 nucleotidesABZR87_RS07975 and ABZR87_RS07980 are separated by 66 nucleotidesABZR87_RS07980 and ABZR87_RS07985 are separated by 94 nucleotides ABZR87_RS07965: ABZR87_RS07965 - recombinase RecA, at 1,693,520 to 1,694,578 _RS07965 ABZR87_RS07970: ABZR87_RS07970 - recombination regulator RecX, at 1,694,673 to 1,695,152 _RS07970 ABZR87_RS07975: ABZR87_RS07975 - DUF2889 domain-containing protein, at 1,695,444 to 1,696,070 _RS07975 ABZR87_RS07980: ABZR87_RS07980 - ADP-forming succinate--CoA ligase subunit beta, at 1,696,137 to 1,697,303 _RS07980 ABZR87_RS07985: ABZR87_RS07985 - succinate--CoA ligase subunit alpha, at 1,697,398 to 1,698,279 _RS07985
Group Condition ABZR87_RS07965 ABZR87_RS07970 ABZR87_RS07975 ABZR87_RS07980 ABZR87_RS07985
no_plant_soil no_plant_soil sample 3; outgrowth in LB -3.0 -0.5 -0.6 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.5 -0.3 -0.5 N.D. N.D.
soil soil sample 5; outgrowth in LB -2.6 -0.4 +0.0 N.D. N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -2.1 -0.2 -0.5 N.D. N.D.
soil soil sample 3; outgrowth in LB -1.5 -0.3 -0.9 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.8 -0.3 -0.6 N.D. N.D.
soil soil sample 8; outgrowth in LB -2.1 -0.2 -0.4 N.D. N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -1.9 -0.3 -0.2 N.D. N.D.
soil soil EcoFAB sample 2; outgrowth in LB -1.7 -0.2 -0.4 N.D. N.D.
soil soil sample 1; outgrowth in LB -1.7 -0.3 -0.3 N.D. N.D.
no_plant_soil no_plant_soil sample 2; outgrowth in LB -1.7 -0.4 -0.2 N.D. N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -1.7 -0.2 -0.3 N.D. N.D.
carbon source Sebacic (C) -0.9 +0.2 -1.5 N.D. N.D.
root root EcoFAB sample 2; outgrowth in LB -1.7 -0.6 +0.2 N.D. N.D.
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -2.1 -0.2 +0.3 N.D. N.D.
soil soil sample 6; outgrowth in LB -1.6 -0.4 +0.0 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.6 -0.1 -0.3 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.7 -0.3 -0.0 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.3 -0.6 -0.2 N.D. N.D.
rhizosphere rhizosphere sample 7; outgrowth in LB -1.4 -0.3 -0.3 N.D. N.D.
carbon source Protocatechuic Acid (C) -1.5 -0.1 -0.2 N.D. N.D.
rhizosphere rhizosphere sample 5; outgrowth in LB -1.2 -0.4 -0.2 N.D. N.D.
soil soil sample 4; outgrowth in LB -0.9 -0.3 -0.5 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.2 -0.5 -0.1 N.D. N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -1.3 -0.1 -0.3 N.D. N.D.
soil soil sample 7; outgrowth in LB -1.5 -0.3 +0.1 N.D. N.D.
soil soil EcoFAB sample 1; outgrowth in LB -2.0 -0.1 +0.4 N.D. N.D.
root root EcoFAB sample 1; outgrowth in LB -1.4 -0.0 +0.6 N.D. N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.2 +0.3 +0.9 N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 -0.3 +1.0 N.D. N.D.
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ABZR87_RS07965
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ABZR87_RS07970
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ABZR87_RS07980
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