Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS07940 and ABZR87_RS07945 are separated by 2 nucleotidesABZR87_RS07945 and ABZR87_RS07950 are separated by 9 nucleotidesABZR87_RS07950 and ABZR87_RS07955 overlap by 4 nucleotidesABZR87_RS07955 and ABZR87_RS07960 overlap by 8 nucleotides ABZR87_RS07940: ABZR87_RS07940 - DUF294 nucleotidyltransferase-like domain-containing protein, at 1,688,171 to 1,689,997 _RS07940 ABZR87_RS07945: ABZR87_RS07945 - 3'-5' exonuclease, at 1,690,000 to 1,690,650 _RS07945 ABZR87_RS07950: ABZR87_RS07950 - sodium/substrate symporter small subunit, at 1,690,660 to 1,690,971 _RS07950 ABZR87_RS07955: ABZR87_RS07955 - sensor histidine kinase, at 1,690,968 to 1,692,548 _RS07955 ABZR87_RS07960: ABZR87_RS07960 - response regulator transcription factor, at 1,692,541 to 1,693,254 _RS07960
Group Condition ABZR87_RS07940 ABZR87_RS07945 ABZR87_RS07950 ABZR87_RS07955 ABZR87_RS07960
carbon source Lauric (C) -0.1 -0.0 -1.1 -2.4 -2.5
carbon source Lauric (C) +0.0 -0.1 -0.8 -2.7 -2.4
carbon source propionate (C) +0.2 -0.0 -1.2 -2.3 -2.0
carbon source propionate (C) +0.1 -0.0 -1.2 -1.8 -2.2
soil soil sample 5; outgrowth in LB -0.1 +0.1 +0.1 -1.7 -2.1
carbon source propionate (C) +0.0 -0.0 -0.4 -1.3 -1.5
carbon source propionate (C) +0.0 -0.2 -0.4 -1.2 -1.2
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.0 -0.2 -0.7 -0.6 -0.7
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.2 -0.0 +0.2 -1.1 -1.4
carbon source 4-Hydroxybenzoic Acid (C) +0.1 -0.3 -0.2 -0.5 -1.0
carbon source acetate (C) +0.0 -0.0 -0.7 -0.6 -0.6
root root sample 5; outgrowth in LB -0.3 -0.4 -0.4 -0.7 -0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.1 -0.2 -0.2 -0.6 -0.5
rhizosphere rhizosphere sample 1; outgrowth in LB -0.1 +0.1 -0.2 -0.7 -0.6
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.1 -0.1 -0.0 -0.7 -0.6
rhizosphere rhizosphere sample 4; outgrowth in LB +0.1 -0.3 +0.2 -0.8 -0.8
carbon source acetate (C) +0.0 +0.1 -0.6 -0.5 -0.5
rhizosphere rhizosphere sample 2; outgrowth in LB +0.0 -0.2 +0.0 -0.6 -0.6
rhizosphere rhizosphere sample 5; outgrowth in LB +0.0 +0.1 +0.1 -0.6 -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.1 -0.3 -0.3 -0.5
rhizosphere rhizosphere sample 6; outgrowth in LB +0.2 -0.4 +0.1 -0.3 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.4 +0.2 -0.4 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.1 -0.2 +0.4 -0.6 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.1 -0.3 +0.4 -0.4 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.3 +0.1 -0.2 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 +0.4 -0.3 -0.3 -0.4
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.1 -0.2 -0.6 +0.2 +0.2
carbon source Octanoic (C) -0.1 +0.4 +0.1 -0.3 -0.6
soil soil EcoFAB sample 1; outgrowth in LB -0.1 +0.5 -0.7 +0.1 +0.1
carbon source L-Glutamic (C) +0.0 -0.3 +0.3 +1.2 +1.2
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