Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS07780 and ABZR87_RS07785 are separated by 52 nucleotidesABZR87_RS07785 and ABZR87_RS07790 are separated by 90 nucleotidesABZR87_RS07790 and ABZR87_RS07795 are separated by 138 nucleotidesABZR87_RS07795 and ABZR87_RS07800 are separated by 211 nucleotides ABZR87_RS07780: ABZR87_RS07780 - tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB, at 1,650,432 to 1,651,802 _RS07780 ABZR87_RS07785: ABZR87_RS07785 - hypothetical protein, at 1,651,855 to 1,652,268 _RS07785 ABZR87_RS07790: ABZR87_RS07790 - NAD(P)/FAD-dependent oxidoreductase, at 1,652,359 to 1,653,357 _RS07790 ABZR87_RS07795: ABZR87_RS07795 - OmpW family outer membrane protein, at 1,653,496 to 1,654,410 _RS07795 ABZR87_RS07800: ABZR87_RS07800 - DUF1571 domain-containing protein, at 1,654,622 to 1,655,539 _RS07800
Group Condition ABZR87_RS07780 ABZR87_RS07785 ABZR87_RS07790 ABZR87_RS07795 ABZR87_RS07800
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -1.0 -0.2 -0.7 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.6 -0.4 -0.4 +0.1
root root EcoFAB sample 2; outgrowth in LB -0.4 -0.5 +0.0 -0.2 +0.0
rhizosphere rhizosphere sample 5; outgrowth in LB -0.4 -0.3 -0.2 -0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.6 +0.1 -0.4 +0.2
phage Ra3_0.1 -0.4 -0.4 +0.1 +0.1 -0.4
phage Ra1_0.01 -0.4 -0.4 +0.1 +0.0 -0.3
carbon source Heptanoic (C) +0.2 -0.8 -0.1 -0.2 +0.1
carbon source acetate (C) -0.2 -0.7 +0.2 -0.0 +0.1
carbon source Lauric (C) -0.5 -0.6 +0.1 +0.1 +0.3
phage Ra3_1 -0.5 +0.3 +0.1 +0.1 -0.6
root root sample 5; outgrowth in LB -0.1 -0.4 +0.4 -0.0 -0.4
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.2 -0.5 +0.2 +0.2 -0.0
rhizosphere rhizosphere sample 2; outgrowth in LB -0.4 +0.3 -0.4 +0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.1 +0.1 -0.4 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.3 -0.4 -0.3 +0.5
rhizosphere rhizosphere sample 9; outgrowth in LB -0.9 +0.6 -0.0 -0.1 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.2 +0.5 -0.3 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 +0.2 +0.2 -0.3 +0.1
carbon source Valeric (C) -0.1 -0.4 +0.4 +0.1 +0.2
carbon source Octanoic (C) +0.6 -0.7 +0.4 -0.0 -0.1
soil soil EcoFAB sample 1; outgrowth in LB +0.2 -0.3 +0.1 -0.2 +0.4
carbon source 4-Hydroxybenzoic Acid (C) +0.2 +0.3 +0.1 -0.4 +0.1
carbon source Octanoic (C) +0.7 -0.7 +0.2 +0.1 -0.1
soil soil sample 9; outgrowth in LB -0.3 +0.5 +0.2 -0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.8 +1.1 -0.2 +0.3
carbon source Protocatechuic Acid (C) +0.3 +0.5 -0.2 +0.1 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 +0.8 +0.2 -0.3 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 +0.1 +0.7 -0.3 +0.5
carbon source Protocatechuic Acid (C) -0.1 +0.6 -0.2 +0.1 +0.1
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ABZR87_RS07780
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ABZR87_RS07785
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ABZR87_RS07795
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ABZR87_RS07800
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