Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS07710 and ABZR87_RS07715 overlap by 14 nucleotidesABZR87_RS07715 and ABZR87_RS07720 overlap by 17 nucleotidesABZR87_RS07720 and ABZR87_RS07725 are separated by 119 nucleotidesABZR87_RS07725 and ABZR87_RS07730 overlap by 4 nucleotides ABZR87_RS07710: ABZR87_RS07710 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 1,635,566 to 1,636,411 _RS07710 ABZR87_RS07715: ABZR87_RS07715 - DMT family transporter, at 1,636,398 to 1,637,303 _RS07715 ABZR87_RS07720: ABZR87_RS07720 - lactoylglutathione lyase, at 1,637,287 to 1,637,694 _RS07720 ABZR87_RS07725: ABZR87_RS07725 - SprT family zinc-dependent metalloprotease, at 1,637,814 to 1,638,692 _RS07725 ABZR87_RS07730: ABZR87_RS07730 - lysophospholipid acyltransferase family protein, at 1,638,689 to 1,639,441 _RS07730
Group Condition ABZR87_RS07710 ABZR87_RS07715 ABZR87_RS07720 ABZR87_RS07725 ABZR87_RS07730
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -2.9 +0.2 -0.5 -0.1 -2.6
soil soil EcoFAB sample 1; outgrowth in LB -2.4 -0.2 -0.1 +0.3 -2.0
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -1.3 -0.2 -0.0 +0.1 -2.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.2 -0.2 -0.1 +0.1 -2.4
soil soil sample 7; outgrowth in LB -0.9 +0.1 +0.1 +0.1 -3.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.1 +0.1 +0.0 +0.0 -2.4
soil soil sample 8; outgrowth in LB -1.0 -0.0 -0.0 +0.0 -2.3
carbon source Trans-2-methyl-2-butenoic (C) -0.4 -0.1 -0.1 +0.3 -2.9
soil soil sample 2; outgrowth in LB -0.8 +0.1 -0.0 +0.1 -2.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.1 +0.4 -0.2 +0.3 -1.4
soil soil sample 3; outgrowth in LB -1.1 +0.2 +0.1 +0.0 -2.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.9 -0.0 +0.0 +0.6 -1.4
root root EcoFAB sample 2; outgrowth in LB -1.4 +0.5 +0.2 -0.2 -1.6
root root EcoFAB sample 1; outgrowth in LB -1.3 -0.0 -0.3 +0.1 -1.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -1.0 +0.1 -0.3 +0.1 -1.4
no_plant_soil no_plant_soil sample 3; outgrowth in LB -1.0 -0.1 -0.1 +0.5 -1.8
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -1.2 -0.0 -0.3 +0.8 -1.8
carbon source Heptanoic (C) -1.3 -0.1 +0.3 -0.0 -1.2
soil soil EcoFAB sample 2; outgrowth in LB -1.0 -0.1 -0.3 +0.4 -1.4
carbon source Heptanoic (C) -1.0 +0.2 +0.0 +0.0 -1.6
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.6 +0.1 +0.1 +0.3 -2.3
soil soil sample 4; outgrowth in LB -0.4 +0.3 +0.0 +0.0 -2.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -1.4 +0.1 -0.3 +0.4 -1.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.0 -0.6 -0.1 +0.5 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.3 +0.0 +0.3 +0.4 -1.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.9 -0.2 -0.1 +0.5 -1.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 +0.3 +0.1 +0.2 -1.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.4 +0.5 +0.4 -0.2 -0.2
carbon source Sebacic (C) -1.0 -0.2 -0.2 -0.3 +1.6
carbon source 4-Hydroxybenzoic Acid (C) -1.1 +0.5 -0.1 -0.2 +2.6
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