Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS07665 and ABZR87_RS07670 are separated by 225 nucleotidesABZR87_RS07670 and ABZR87_RS07675 are separated by 4 nucleotidesABZR87_RS07675 and ABZR87_RS07680 are separated by 17 nucleotidesABZR87_RS07680 and ABZR87_RS07685 overlap by 4 nucleotides ABZR87_RS07665: ABZR87_RS07665 - aminopeptidase P N-terminal domain-containing protein, at 1,623,830 to 1,625,218 _RS07665 ABZR87_RS07670: ABZR87_RS07670 - bifunctional diguanylate cyclase/phosphodiesterase, at 1,625,444 to 1,627,501 _RS07670 ABZR87_RS07675: ABZR87_RS07675 - N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU, at 1,627,506 to 1,628,198 _RS07675 ABZR87_RS07680: ABZR87_RS07680 - AzlD domain-containing protein, at 1,628,216 to 1,628,542 _RS07680 ABZR87_RS07685: ABZR87_RS07685 - AzlC family ABC transporter permease, at 1,628,539 to 1,629,267 _RS07685
Group Condition ABZR87_RS07665 ABZR87_RS07670 ABZR87_RS07675 ABZR87_RS07680 ABZR87_RS07685
carbon source Pimelic (C) -3.0 +0.2 -4.6 -0.4 -0.3
carbon source Pimelic (C) -3.6 -0.2 -3.3 -0.3 -0.5
carbon source Trans-2-methyl-2-butenoic (C) -4.6 -0.1 -2.7 -0.2 -0.2
carbon source Trans-2-methyl-2-butenoic (C) -4.3 -0.0 -2.4 -0.2 -0.5
carbon source 4-Hydroxybenzoic Acid (C) -3.0 -0.7 -2.7 -0.5 -0.4
soil soil EcoFAB sample 1; outgrowth in LB -3.9 -0.2 -2.8 -0.1 -0.3
root root EcoFAB sample 2; outgrowth in LB -2.8 -0.1 -3.7 -0.2 -0.0
root root EcoFAB sample 1; outgrowth in LB -3.2 -0.0 -3.1 +0.0 -0.0
nitrogen source nitrogen source nitrate 20mM -4.0 -0.2 -1.0 -0.3 -0.6
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -4.2 +0.0 -2.0 +0.2 -0.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -3.8 -0.1 -1.9 -0.1 -0.2
nitrogen source nitrogen source nitrate 5mM -4.3 -0.1 -0.9 -0.1 -0.4
carbon source Glycerol (C) -3.3 -0.0 -2.2 -0.2 -0.1
carbon source Sebacic (C) -2.2 +0.1 -1.7 -1.2 -0.7
nitrogen source nitrogen source Ammonium chloride 20mM -4.2 -0.1 -1.0 -0.0 -0.5
carbon source butyrate (C) -3.7 -0.0 -1.2 -0.8 -0.1
carbon source D-Galactose (C) -4.0 -0.0 -1.1 -0.3 -0.1
carbon source Glycerol (C) -2.9 -0.0 -2.3 +0.1 -0.2
nitrogen source nitrogen source nitrate 20mM -3.7 -0.1 -1.2 -0.2 -0.1
carbon source propionate (C) -4.4 -0.1 -0.7 +0.1 -0.1
nitrogen source nitrogen source nitrate 5mM -3.8 -0.1 -1.1 +0.2 -0.3
nitrogen source nitrogen source Ammonium chloride 20mM -3.6 -0.1 -1.1 +0.0 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -3.8 +0.1 -0.8 -0.2 -0.2
carbon source Pimelic (C) -3.6 -0.0 -0.8 -0.2 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.6 +0.2 -0.9 -0.4 -0.1
carbon source D-Galactose (C) -3.6 -0.0 -1.0 +0.0 -0.2
carbon source D-Glucose (C) -3.5 -0.0 -0.8 -0.1 -0.3
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -2.4 -0.2 -1.7 +0.1 -0.3
soil soil EcoFAB sample 2; outgrowth in LB -2.9 -0.0 -1.7 +0.1 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.6 +0.2 -0.8 -0.7 -0.5
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ABZR87_RS07665
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ABZR87_RS07670
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