Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS07655 and ABZR87_RS07660 are separated by 3 nucleotidesABZR87_RS07660 and ABZR87_RS07665 overlap by 4 nucleotidesABZR87_RS07665 and ABZR87_RS07670 are separated by 225 nucleotidesABZR87_RS07670 and ABZR87_RS07675 are separated by 4 nucleotides ABZR87_RS07655: ABZR87_RS07655 - FAD-dependent oxidoreductase, at 1,621,311 to 1,622,594 _RS07655 ABZR87_RS07660: ABZR87_RS07660 - UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase, at 1,622,598 to 1,623,833 _RS07660 ABZR87_RS07665: ABZR87_RS07665 - aminopeptidase P N-terminal domain-containing protein, at 1,623,830 to 1,625,218 _RS07665 ABZR87_RS07670: ABZR87_RS07670 - bifunctional diguanylate cyclase/phosphodiesterase, at 1,625,444 to 1,627,501 _RS07670 ABZR87_RS07675: ABZR87_RS07675 - N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU, at 1,627,506 to 1,628,198 _RS07675
Group Condition ABZR87_RS07655 ABZR87_RS07660 ABZR87_RS07665 ABZR87_RS07670 ABZR87_RS07675
carbon source Trans-2-methyl-2-butenoic (C) -0.2 N.D. -4.6 -0.1 -2.7
carbon source 4-Hydroxybenzoic Acid (C) -1.0 N.D. -3.0 -0.7 -2.7
carbon source Pimelic (C) +0.1 N.D. -3.0 +0.2 -4.6
carbon source Pimelic (C) -0.1 N.D. -3.6 -0.2 -3.3
carbon source Trans-2-methyl-2-butenoic (C) -0.2 N.D. -4.3 -0.0 -2.4
soil soil EcoFAB sample 1; outgrowth in LB +0.1 N.D. -3.9 -0.2 -2.8
root root EcoFAB sample 2; outgrowth in LB +0.0 N.D. -2.8 -0.1 -3.7
nitrogen source nitrogen source nitrate 5mM -0.7 N.D. -4.3 -0.1 -0.9
root root EcoFAB sample 1; outgrowth in LB +0.3 N.D. -3.2 -0.0 -3.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.3 N.D. -4.2 +0.0 -2.0
nitrogen source nitrogen source nitrate 20mM -0.6 N.D. -4.0 -0.2 -1.0
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.0 N.D. -3.8 -0.1 -1.9
nitrogen source nitrogen source nitrate 5mM -0.6 N.D. -3.8 -0.1 -1.1
nitrogen source nitrogen source nitrate 20mM -0.6 N.D. -3.7 -0.1 -1.2
nitrogen source nitrogen source Ammonium chloride 20mM -0.3 N.D. -4.2 -0.1 -1.0
carbon source Glycerol (C) -0.1 N.D. -3.3 -0.0 -2.2
carbon source D-Galactose (C) -0.2 N.D. -4.0 -0.0 -1.1
carbon source propionate (C) -0.1 N.D. -4.4 -0.1 -0.7
nitrogen source nitrogen source Ammonium chloride 20mM -0.4 N.D. -3.6 -0.1 -1.1
carbon source Glycerol (C) +0.0 N.D. -2.9 -0.0 -2.3
carbon source butyrate (C) +0.0 N.D. -3.7 -0.0 -1.2
carbon source D-Galactose (C) -0.1 N.D. -3.6 -0.0 -1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 N.D. -3.6 +0.2 -0.9
carbon source D-Glucose (C) -0.2 N.D. -3.5 -0.0 -0.8
carbon source Pimelic (C) -0.1 N.D. -3.6 -0.0 -0.8
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.1 N.D. -3.8 +0.1 -0.8
soil soil EcoFAB sample 2; outgrowth in LB +0.2 N.D. -2.9 -0.0 -1.7
carbon source Pimelic (C) +0.0 N.D. -3.7 +0.0 -0.8
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.1 N.D. -2.4 -0.2 -1.7
carbon source propionate (C) -0.1 N.D. -4.1 +0.0 +0.2
remove
ABZR87_RS07655
plot		 remove
ABZR87_RS07660
plot		 remove
ABZR87_RS07665		 remove
ABZR87_RS07670
plot		 remove
ABZR87_RS07675
plot