Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS07590 and ABZR87_RS07595 are separated by 63 nucleotidesABZR87_RS07595 and ABZR87_RS07600 are separated by 175 nucleotidesABZR87_RS07600 and ABZR87_RS07605 overlap by 4 nucleotidesABZR87_RS07605 and ABZR87_RS07610 are separated by 19 nucleotides ABZR87_RS07590: ABZR87_RS07590 - iron-sulfur cluster insertion protein ErpA, at 1,609,504 to 1,609,878 _RS07590 ABZR87_RS07595: ABZR87_RS07595 - anhydro-N-acetylmuramic acid kinase, at 1,609,942 to 1,611,096 _RS07595 ABZR87_RS07600: ABZR87_RS07600 - tyrosine--tRNA ligase, at 1,611,272 to 1,612,537 _RS07600 ABZR87_RS07605: ABZR87_RS07605 - D-aminoacyl-tRNA deacylase, at 1,612,534 to 1,613,046 _RS07605 ABZR87_RS07610: ABZR87_RS07610 - histidine phosphatase family protein, at 1,613,066 to 1,613,746 _RS07610
Group Condition ABZR87_RS07590 ABZR87_RS07595 ABZR87_RS07600 ABZR87_RS07605 ABZR87_RS07610
rhizosphere rhizosphere sample 4; outgrowth in LB N.D. -0.1 N.D. -2.7 -0.5
carbon source 4-Hydroxybenzoic Acid (C) N.D. -0.1 N.D. -2.4 -0.7
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. -0.4 N.D. -1.8 -0.3
soil soil EcoFAB sample 1; outgrowth in LB N.D. -0.9 N.D. -0.5 -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 N.D. -1.2 -0.3
carbon source Hexanoic (C) N.D. -0.1 N.D. -1.5 -0.2
micoeukaryotes Dictyostellum sp.mixed culture-2 N.D. -0.2 N.D. -1.2 -0.2
carbon source Heptanoic (C) N.D. -0.7 N.D. -0.9 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -0.1 N.D. -1.2 -0.2
micoeukaryotes Dictyostellum sp.mixed culture-1 N.D. -0.1 N.D. -1.1 -0.3
carbon source butyrate (C) N.D. -0.3 N.D. -0.5 -0.6
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.3 N.D. -0.9 -0.2
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. +0.0 N.D. -1.0 -0.4
nitrogen source nitrogen source nitrate 20mM N.D. -0.2 N.D. -0.5 -0.4
carbon source propionate (C) N.D. +0.0 N.D. -1.0 -0.2
carbon source Octanoic (C) N.D. -1.1 N.D. -0.2 +0.4
soil soil sample 3; outgrowth in LB N.D. +0.3 N.D. -1.0 -0.2
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. +0.0 N.D. +0.5 -1.4
carbon source Dodecandioic (C) N.D. +0.2 N.D. -0.8 -0.2
carbon source succinate (C) N.D. +0.3 N.D. -0.8 -0.2
carbon source Octanoic (C) N.D. -0.8 N.D. -0.4 +0.8
carbon source succinate (C) N.D. +0.4 N.D. -0.7 -0.1
soil soil sample 9; outgrowth in LB N.D. -0.2 N.D. +0.4 -0.5
carbon source acetate (C) N.D. +1.3 N.D. -1.1 -0.2
carbon source Lauric (C) N.D. +0.8 N.D. -0.6 -0.2
root root sample 4; outgrowth in LB N.D. -0.3 N.D. +0.6 -0.3
carbon source Lauric (C) N.D. +0.7 N.D. -0.4 -0.3
carbon source acetate (C) N.D. +1.0 N.D. -0.7 -0.2
root root EcoFAB sample 2; outgrowth in LB N.D. -0.5 N.D. +0.9 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.3 N.D. -0.4 +0.6
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ABZR87_RS07590
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ABZR87_RS07595
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ABZR87_RS07605
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ABZR87_RS07610
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