Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS07555 and ABZR87_RS07565 are separated by 356 nucleotidesABZR87_RS07565 and ABZR87_RS07570 are separated by 700 nucleotidesABZR87_RS07570 and ABZR87_RS07575 are separated by 12 nucleotidesABZR87_RS07575 and ABZR87_RS07580 are separated by 231 nucleotides ABZR87_RS07555: ABZR87_RS07555 - DUF3025 domain-containing protein, at 1,604,805 to 1,605,605 _RS07555 ABZR87_RS07565: ABZR87_RS07565 - OsmC family protein, at 1,605,962 to 1,606,408 _RS07565 ABZR87_RS07570: ABZR87_RS07570 - 50S ribosomal protein L13, at 1,607,109 to 1,607,537 _RS07570 ABZR87_RS07575: ABZR87_RS07575 - 30S ribosomal protein S9, at 1,607,550 to 1,607,942 _RS07575 ABZR87_RS07580: ABZR87_RS07580 - DUF6776 family protein, at 1,608,174 to 1,608,929 _RS07580
Group Condition ABZR87_RS07555 ABZR87_RS07565 ABZR87_RS07570 ABZR87_RS07575 ABZR87_RS07580
soil soil EcoFAB sample 1; outgrowth in LB -0.5 -0.7 N.D. N.D. -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.5 N.D. N.D. -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 +0.0 N.D. N.D. -0.8
root root sample 6; outgrowth in LB -0.1 -0.7 N.D. N.D. -0.4
rhizosphere rhizosphere sample 2; outgrowth in LB -0.7 -0.3 N.D. N.D. -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.4 -0.1 N.D. N.D. -0.5
rhizosphere rhizosphere sample 1; outgrowth in LB -0.4 -0.6 N.D. N.D. -0.1
rhizosphere rhizosphere sample 6; outgrowth in LB -0.4 -0.3 N.D. N.D. -0.2
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.1 -0.6 N.D. N.D. -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 +0.2 N.D. N.D. -0.5
carbon source 1,2-Propanediol (C) +0.1 -0.7 N.D. N.D. -0.1
carbon source Octanoic (C) +0.3 +0.1 N.D. N.D. -1.1
carbon source Protocatechuic Acid (C) -0.3 -0.5 N.D. N.D. +0.3
carbon source Octanoic (C) +0.1 +0.2 N.D. N.D. -0.7
carbon source Sebacic (C) -0.6 +0.1 N.D. N.D. +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.1 -0.5 N.D. N.D. +0.4
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.5 -0.1 N.D. N.D. +0.4
carbon source Carbon source D-Glucose 10 mM +0.3 -0.5 N.D. N.D. +0.0
carbon source Pimelic (C) +0.3 -0.5 N.D. N.D. +0.1
carbon source Beta-alanine (C) +0.4 -0.6 N.D. N.D. +0.2
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.5 N.D. N.D. +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.2 N.D. N.D. -0.5
carbon source Pimelic (C) +0.6 -0.3 N.D. N.D. +0.2
soil soil EcoFAB sample 2; outgrowth in LB +0.9 +0.0 N.D. N.D. -0.5
nitrogen source nitrogen source nitrate 20mM +0.5 -0.1 N.D. N.D. +0.3
phage Ra1_0.1 +0.4 +0.2 N.D. N.D. +0.4
carbon source Dodecandioic (C) +0.4 +0.2 N.D. N.D. +0.4
carbon source Dodecandioic (C) +0.6 +0.3 N.D. N.D. +0.3
carbon source Azelaic (C) +0.6 +0.3 N.D. N.D. +0.4
root root EcoFAB sample 2; outgrowth in LB +1.0 +0.3 N.D. N.D. +0.3
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