Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS07535 and ABZR87_RS07540 are separated by 76 nucleotidesABZR87_RS07540 and ABZR87_RS07545 are separated by 167 nucleotidesABZR87_RS07545 and ABZR87_RS07550 are separated by 33 nucleotidesABZR87_RS07550 and ABZR87_RS07555 are separated by 4 nucleotides ABZR87_RS07535: ABZR87_RS07535 - amino acid ABC transporter ATP-binding protein, at 1,600,625 to 1,601,359 _RS07535 ABZR87_RS07540: ABZR87_RS07540 - class II glutamine amidotransferase, at 1,601,436 to 1,602,266 _RS07540 ABZR87_RS07545: ABZR87_RS07545 - glycerate kinase, at 1,602,434 to 1,603,732 _RS07545 ABZR87_RS07550: ABZR87_RS07550 - dihydroorotase, at 1,603,766 to 1,604,800 _RS07550 ABZR87_RS07555: ABZR87_RS07555 - DUF3025 domain-containing protein, at 1,604,805 to 1,605,605 _RS07555
Group Condition ABZR87_RS07535 ABZR87_RS07540 ABZR87_RS07545 ABZR87_RS07550 ABZR87_RS07555
carbon source Octanoic (C) -2.5 -0.5 -0.6 N.D. +0.1
carbon source Octanoic (C) -1.6 -0.3 -0.3 N.D. +0.3
rhizosphere rhizosphere sample 3; outgrowth in LB -1.3 -0.1 -0.5 N.D. +0.0
carbon source 3-Hydroxypropionate (C) -1.5 +0.0 -0.0 N.D. +0.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.9 +0.1 -0.0 N.D. -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 -0.1 +0.2 N.D. -0.5
carbon source 1,2-Propanediol (C) -1.6 +0.3 +0.0 N.D. +0.1
soil soil sample 3; outgrowth in LB -1.0 +0.1 -0.2 N.D. -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.5 -0.1 +0.3 N.D. -0.7
rhizosphere rhizosphere sample 1; outgrowth in LB -0.9 +0.2 +0.3 N.D. -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.9 +0.2 +0.2 N.D. -0.0
phage Ra1_0.01 -0.7 -0.2 +0.1 N.D. +0.4
carbon source Sebacic (C) +0.5 -0.1 -0.1 N.D. -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 +0.2 +0.3 N.D. -0.1
root root sample 6; outgrowth in LB -0.5 +0.7 -0.2 N.D. -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.5 -0.1 N.D. -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.9 -0.3 +0.2 N.D. -0.3
soil soil EcoFAB sample 1; outgrowth in LB +0.8 -0.0 +0.1 N.D. -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.8 -0.3 +0.3 N.D. -0.2
phage Ra1_0.1 -0.1 -0.4 +0.6 N.D. +0.4
carbon source Heptanoic (C) +0.9 -0.4 -0.1 N.D. +0.4
nitrogen source nitrogen source nitrite 5mM +0.7 -0.3 +0.0 N.D. +0.3
micoeukaryotes C.elegans, mixed culture-2 +1.0 +0.0 -0.2 N.D. +0.2
soil soil EcoFAB sample 2; outgrowth in LB -0.3 +0.5 -0.1 N.D. +0.9
phage Ra3_1 +0.6 -0.1 +0.5 N.D. +0.2
carbon source Azelaic (C) +0.9 -0.1 -0.3 N.D. +0.6
nitrogen source nitrogen source Ammonium chloride 20mM +0.7 -0.2 +0.0 N.D. +0.6
nitrogen source nitrogen source nitrate 5mM +0.8 -0.1 -0.1 N.D. +0.6
nitrogen source nitrogen source nitrate 20mM +0.8 -0.1 +0.1 N.D. +0.5
root root EcoFAB sample 2; outgrowth in LB +0.3 +0.2 +0.2 N.D. +1.0
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