Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS07430 and ABZR87_RS07435 are separated by 31 nucleotidesABZR87_RS07435 and ABZR87_RS07440 are separated by 86 nucleotidesABZR87_RS07440 and ABZR87_RS07445 are separated by 148 nucleotidesABZR87_RS07445 and ABZR87_RS07450 are separated by 102 nucleotides ABZR87_RS07430: ABZR87_RS07430 - FmdB family zinc ribbon protein, at 1,575,749 to 1,576,096 _RS07430 ABZR87_RS07435: ABZR87_RS07435 - DUF502 domain-containing protein, at 1,576,128 to 1,576,865 _RS07435 ABZR87_RS07440: ABZR87_RS07440 - aspartate--tRNA ligase, at 1,576,952 to 1,578,778 _RS07440 ABZR87_RS07445: ABZR87_RS07445 - hypothetical protein, at 1,578,927 to 1,579,787 _RS07445 ABZR87_RS07450: ABZR87_RS07450 - dihydroneopterin triphosphate diphosphatase, at 1,579,890 to 1,580,375 _RS07450
Group Condition ABZR87_RS07430 ABZR87_RS07435 ABZR87_RS07440 ABZR87_RS07445 ABZR87_RS07450
carbon source Octanoic (C) -3.3 -2.6 N.D. +0.4 -0.9
carbon source Octanoic (C) -1.9 -3.2 N.D. -0.4 -0.7
root root sample 5; outgrowth in LB -1.7 -0.4 N.D. -0.9 -1.2
carbon source Sebacic (C) -2.1 -0.6 N.D. +0.9 -1.7
carbon source Heptanoic (C) -0.5 -1.5 N.D. +0.2 -0.7
carbon source Heptanoic (C) -0.2 -1.7 N.D. -0.1 -0.0
soil soil sample 8; outgrowth in LB -0.4 -1.5 N.D. +0.1 -0.2
control NoPredeControl -0.2 -1.6 N.D. +0.1 -0.1
root root sample 6; outgrowth in LB -2.8 +0.0 N.D. +1.3 -0.3
nitrogen source nitrogen source nitrite 0.5mM -1.8 +0.4 N.D. -0.5 +0.4
carbon source propionate (C) +0.0 -1.7 N.D. +0.2 +0.3
rhizosphere rhizosphere sample 9; outgrowth in LB -0.6 -0.2 N.D. +0.5 -0.8
rhizosphere rhizosphere sample 3; outgrowth in LB +0.8 -0.7 N.D. +0.8 -1.9
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.6 -1.0 N.D. +0.9 +0.7
carbon source Carbon source D-Glucose 10 mM -1.0 +0.3 N.D. -0.2 +0.2
micoeukaryotes Acanthamoeba sp., muxed culture-1 -1.1 -0.3 N.D. +0.4 +0.5
carbon source Lauric (C) +0.5 -1.1 N.D. -0.2 +0.5
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB +0.8 -1.0 N.D. +0.1 +0.0
rhizosphere rhizosphere sample 6; outgrowth in LB +0.4 -0.9 N.D. +0.7 -0.2
rhizosphere rhizosphere sample 4; outgrowth in LB +0.5 -0.3 N.D. +0.4 -0.6
nitrogen source nitrogen source nitrite 0.5mM -0.2 -0.7 N.D. -0.0 +0.9
root root sample 4; outgrowth in LB +0.0 -0.9 N.D. +0.6 +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.5 -0.7 N.D. -0.3 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 +0.8 N.D. +0.1 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +1.0 -0.5 N.D. -0.2 +0.2
rhizosphere rhizosphere sample 2; outgrowth in LB +0.8 -0.4 N.D. +0.4 -0.3
carbon source 4-Hydroxybenzoic Acid (C) +1.2 +0.1 N.D. -0.4 -0.0
carbon source Azelaic (C) +1.4 -0.2 N.D. +0.5 -0.3
soil soil EcoFAB sample 2; outgrowth in LB +0.6 -0.3 N.D. +0.6 +0.6
soil soil sample 1; outgrowth in LB +0.8 +0.7 N.D. +0.2 +0.1
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