Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS07155 and ABZR87_RS07160 are separated by 455 nucleotidesABZR87_RS07160 and ABZR87_RS07165 are separated by 619 nucleotidesABZR87_RS07165 and ABZR87_RS07170 overlap by 1 nucleotidesABZR87_RS07170 and ABZR87_RS07175 overlap by 4 nucleotides ABZR87_RS07155: ABZR87_RS07155 - helix-turn-helix transcriptional regulator, at 1,512,615 to 1,512,875 _RS07155 ABZR87_RS07160: ABZR87_RS07160 - HAD domain-containing protein, at 1,513,331 to 1,513,834 _RS07160 ABZR87_RS07165: ABZR87_RS07165 - P-loop NTPase fold protein, at 1,514,454 to 1,516,334 _RS07165 ABZR87_RS07170: ABZR87_RS07170 - Qat anti-phage system associated protein QatB, at 1,516,334 to 1,517,161 _RS07170 ABZR87_RS07175: ABZR87_RS07175 - Qat anti-phage system QueC-like protein QatC, at 1,517,158 to 1,518,444 _RS07175
Group Condition ABZR87_RS07155 ABZR87_RS07160 ABZR87_RS07165 ABZR87_RS07170 ABZR87_RS07175
rhizosphere rhizosphere sample 3; outgrowth in LB -0.5 -0.0 -0.0 -0.7 -0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.5 +0.0 +0.1 -0.3 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.3 -0.0 +0.1 -0.2 +0.1
rhizosphere rhizosphere sample 6; outgrowth in LB -0.4 +0.1 +0.2 +0.1 +0.2
rhizosphere rhizosphere sample 2; outgrowth in LB -0.5 +0.2 +0.0 +0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.1 +0.1 +0.1 +0.1
rhizosphere rhizosphere sample 9; outgrowth in LB -0.2 +0.3 +0.2 +0.0 -0.0
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.2 +0.2 +0.2 +0.0 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.2 +0.4 -0.2 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.1 -0.0 +0.6 +0.3
soil soil sample 3; outgrowth in LB -0.1 +0.2 +0.2 +0.2 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.1 +0.3 +0.2 +0.0 +0.1
carbon source Sebacic (C) +0.4 -0.0 +0.2 +0.1 -0.0
carbon source Dodecandioic (C) +0.4 -0.1 +0.1 +0.3 -0.0
carbon source Heptanoic (C) +0.3 -0.0 +0.2 +0.2 +0.1
nitrogen source nitrogen source nitrate 5mM +0.2 +0.1 +0.1 +0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.0 +0.2 +0.1 +0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 +0.4 +0.1 -0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.0 +0.0 +0.3 +0.1
carbon source D-Glucose (C) +0.1 +0.1 +0.1 +0.4 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.2 +0.1 -0.0 +0.2
carbon source butyrate (C) +0.4 -0.0 +0.1 +0.2 +0.1
soil soil EcoFAB sample 1; outgrowth in LB -0.3 +0.2 +0.1 +0.3 +0.4
soil soil sample 5; outgrowth in LB +0.2 +0.2 +0.1 +0.3 +0.1
root root EcoFAB sample 1; outgrowth in LB +0.0 +0.3 +0.1 +0.2 +0.3
carbon source propionate (C) +0.5 +0.1 +0.0 +0.4 -0.0
root root sample 5; outgrowth in LB +0.4 -0.0 +0.1 +0.4 +0.2
root root EcoFAB sample 2; outgrowth in LB +0.5 +0.4 +0.1 -0.2 +0.2
carbon source Octanoic (C) +0.7 +0.2 +0.2 +0.3 -0.0
root root sample 6; outgrowth in LB +0.4 +0.2 +0.4 +0.5 +0.3
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