Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS07140 and ABZR87_RS07145 are separated by 802 nucleotidesABZR87_RS07145 and ABZR87_RS07150 overlap by 8 nucleotidesABZR87_RS07150 and ABZR87_RS07155 are separated by 124 nucleotidesABZR87_RS07155 and ABZR87_RS07160 are separated by 455 nucleotides ABZR87_RS07140: ABZR87_RS07140 - site-specific integrase, at 1,508,514 to 1,510,091 _RS07140 ABZR87_RS07145: ABZR87_RS07145 - hypothetical protein, at 1,510,894 to 1,512,090 _RS07145 ABZR87_RS07150: ABZR87_RS07150 - hypothetical protein, at 1,512,083 to 1,512,490 _RS07150 ABZR87_RS07155: ABZR87_RS07155 - helix-turn-helix transcriptional regulator, at 1,512,615 to 1,512,875 _RS07155 ABZR87_RS07160: ABZR87_RS07160 - HAD domain-containing protein, at 1,513,331 to 1,513,834 _RS07160
Group Condition ABZR87_RS07140 ABZR87_RS07145 ABZR87_RS07150 ABZR87_RS07155 ABZR87_RS07160
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.1 -0.0 -0.2 -0.5 +0.0
rhizosphere rhizosphere sample 3; outgrowth in LB -0.1 -0.0 +0.3 -0.5 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.1 -0.1 -0.4 +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.0 +0.3 -0.1 -0.5 +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 -0.1 +0.2 -0.2 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.0 -0.2 -0.1 +0.2
soil soil EcoFAB sample 1; outgrowth in LB -0.1 +0.0 +0.2 -0.3 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.1 +0.1 +0.2 -0.3 -0.0
carbon source Octanoic (C) -0.3 +0.1 +0.2 +0.1 +0.1
carbon source butyrate (C) +0.1 +0.1 -0.1 +0.4 -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.1 +0.1 +0.1 -0.1 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.1 +0.2 -0.1 +0.3
carbon source Dodecandioic (C) +0.1 +0.1 +0.0 +0.4 -0.1
root root sample 5; outgrowth in LB -0.2 +0.1 +0.5 +0.4 -0.0
nitrogen source nitrogen source nitrate 5mM +0.2 +0.1 +0.1 +0.3 +0.0
carbon source Sebacic (C) +0.1 +0.1 +0.2 +0.3 +0.1
carbon source D-Glucose (C) +0.1 +0.1 +0.3 +0.2 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.1 +0.2 -0.0 +0.2
carbon source Azelaic (C) +0.2 +0.0 +0.3 +0.2 +0.0
nitrogen source nitrogen source nitrite 5mM +0.2 +0.2 +0.2 +0.2 +0.1
carbon source propionate (C) +0.1 +0.1 +0.1 +0.5 +0.1
rhizosphere rhizosphere sample 9; outgrowth in LB +0.4 +0.2 +0.2 -0.2 +0.3
carbon source Sebacic (C) +0.0 +0.1 +0.3 +0.4 -0.0
carbon source Lauric (C) +0.1 +0.1 +0.3 +0.2 +0.1
root root EcoFAB sample 1; outgrowth in LB +0.2 +0.3 +0.1 +0.0 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.2 +0.1 +0.3 +0.2
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.1 +0.2 +0.4 +0.4
carbon source Octanoic (C) +0.3 -0.0 -0.0 +0.7 +0.2
root root sample 6; outgrowth in LB +0.2 +0.2 +0.5 +0.4 +0.2
root root EcoFAB sample 2; outgrowth in LB +0.2 +0.2 +0.2 +0.5 +0.4
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