Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS07075 and ABZR87_RS07080 are separated by 4 nucleotidesABZR87_RS07080 and ABZR87_RS07085 are separated by 15 nucleotidesABZR87_RS07085 and ABZR87_RS07090 are separated by 305 nucleotidesABZR87_RS07090 and ABZR87_RS07095 are separated by 9 nucleotides ABZR87_RS07075: ABZR87_RS07075 - LPS export ABC transporter periplasmic protein LptC, at 1,493,377 to 1,494,009 _RS07075 ABZR87_RS07080: ABZR87_RS07080 - HAD family hydrolase, at 1,494,014 to 1,494,610 _RS07080 ABZR87_RS07085: ABZR87_RS07085 - KpsF/GutQ family sugar-phosphate isomerase, at 1,494,626 to 1,495,609 _RS07085 ABZR87_RS07090: ABZR87_RS07090 - monovalent cation:proton antiporter family protein, at 1,495,915 to 1,497,894 _RS07090 ABZR87_RS07095: ABZR87_RS07095 - ribbon-helix-helix domain-containing protein, at 1,497,904 to 1,498,308 _RS07095
Group Condition ABZR87_RS07075 ABZR87_RS07080 ABZR87_RS07085 ABZR87_RS07090 ABZR87_RS07095
carbon source Heptanoic (C) N.D. +0.2 N.D. -1.3 -0.5
carbon source Sebacic (C) N.D. -0.7 N.D. -0.2 -0.7
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. -0.6 N.D. -0.5 -0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.7 N.D. -0.3 -0.3
carbon source Protocatechuic Acid (C) N.D. -0.0 N.D. -0.7 -0.6
carbon source Heptanoic (C) N.D. +0.3 N.D. -1.1 -0.5
carbon source Octanoic (C) N.D. -0.0 N.D. -0.9 -0.4
soil soil EcoFAB sample 1; outgrowth in LB N.D. -0.5 N.D. -0.9 +0.3
carbon source Glycerol (C) N.D. +0.1 N.D. +0.0 -1.2
root root EcoFAB sample 1; outgrowth in LB N.D. -0.1 N.D. -0.8 -0.1
carbon source Octanoic (C) N.D. +0.8 N.D. -0.8 -1.0
carbon source Dodecandioic (C) N.D. -0.2 N.D. -0.9 +0.2
carbon source Dodecandioic (C) N.D. -0.3 N.D. -0.9 +0.4
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. +0.4 N.D. -1.0 -0.3
carbon source Protocatechuic Acid (C) N.D. +0.1 N.D. -0.6 -0.2
carbon source propionate (C) N.D. +0.2 N.D. -0.4 -0.5
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -0.1 N.D. -1.1 +0.6
carbon source butyrate (C) N.D. +0.4 N.D. -0.1 -0.8
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. +0.2 N.D. -0.7 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.5 N.D. -0.3 -0.7
carbon source Azelaic (C) N.D. +0.1 N.D. -0.7 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.6 N.D. -0.1 +0.5
root root EcoFAB sample 2; outgrowth in LB N.D. +0.3 N.D. -0.9 +0.4
root root sample 6; outgrowth in LB N.D. +0.4 N.D. +0.1 -0.6
soil soil EcoFAB sample 2; outgrowth in LB N.D. +0.5 N.D. -0.6 +0.1
carbon source Suberic (C) N.D. +0.6 N.D. -0.1 -0.3
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. +0.4 N.D. -0.3 +0.2
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. +0.1 N.D. -0.3 +0.6
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. +0.3 N.D. -0.2 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +1.3 N.D. -0.2 +0.7
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