Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS07060 and ABZR87_RS07065 are separated by 96 nucleotidesABZR87_RS07065 and ABZR87_RS07070 are separated by 30 nucleotidesABZR87_RS07070 and ABZR87_RS07075 are separated by 59 nucleotidesABZR87_RS07075 and ABZR87_RS07080 are separated by 4 nucleotides ABZR87_RS07060: ABZR87_RS07060 - RNA polymerase factor sigma-54, at 1,490,303 to 1,491,814 _RS07060 ABZR87_RS07065: ABZR87_RS07065 - LPS export ABC transporter ATP-binding protein, at 1,491,911 to 1,492,699 _RS07065 ABZR87_RS07070: ABZR87_RS07070 - lipopolysaccharide transport periplasmic protein LptA, at 1,492,730 to 1,493,317 _RS07070 ABZR87_RS07075: ABZR87_RS07075 - LPS export ABC transporter periplasmic protein LptC, at 1,493,377 to 1,494,009 _RS07075 ABZR87_RS07080: ABZR87_RS07080 - HAD family hydrolase, at 1,494,014 to 1,494,610 _RS07080
Group Condition ABZR87_RS07060 ABZR87_RS07065 ABZR87_RS07070 ABZR87_RS07075 ABZR87_RS07080
nitrogen source nitrogen source nitrate 5mM -5.2 N.D. N.D. N.D. -0.3
nitrogen source nitrogen source nitrate 5mM -5.1 N.D. N.D. N.D. -0.2
nitrogen source nitrogen source nitrate 20mM -5.1 N.D. N.D. N.D. -0.2
nitrogen source nitrogen source nitrate 20mM -5.0 N.D. N.D. N.D. -0.3
carbon source Trans-2-methyl-2-butenoic (C) -4.8 N.D. N.D. N.D. -0.2
carbon source Heptanoic (C) -5.1 N.D. N.D. N.D. +0.3
carbon source Heptanoic (C) -4.9 N.D. N.D. N.D. +0.2
carbon source Trans-2-methyl-2-butenoic (C) -4.5 N.D. N.D. N.D. -0.0
carbon source succinate (C) -4.4 N.D. N.D. N.D. +0.0
carbon source propionate (C) -4.5 N.D. N.D. N.D. +0.1
carbon source succinate (C) -4.6 N.D. N.D. N.D. +0.3
carbon source propionate (C) -4.4 N.D. N.D. N.D. +0.1
carbon source propionate (C) -4.1 N.D. N.D. N.D. +0.0
carbon source Valeric (C) -4.2 N.D. N.D. N.D. +0.2
carbon source propionate (C) -4.2 N.D. N.D. N.D. +0.2
nitrogen source nitrogen source nitrite 1mM -3.9 N.D. N.D. N.D. -0.0
carbon source Valeric (C) -3.8 N.D. N.D. N.D. +0.3
nitrogen source nitrogen source nitrite 5mM -3.3 N.D. N.D. N.D. +0.1
nitrogen source nitrogen source nitrite 5mM -3.4 N.D. N.D. N.D. +0.2
nitrogen source nitrogen source nitrite 0.5mM -2.7 N.D. N.D. N.D. -0.1
soil soil sample 5; outgrowth in LB -2.6 N.D. N.D. N.D. -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.9 N.D. N.D. N.D. -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.9 N.D. N.D. N.D. +1.3
phage Ra3_0.1 +2.4 N.D. N.D. N.D. -0.1
carbon source butyrate (C) +2.2 N.D. N.D. N.D. +0.3
carbon source adipate (C) +2.6 N.D. N.D. N.D. +0.2
carbon source adipate (C) +2.9 N.D. N.D. N.D. +0.3
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +3.3 N.D. N.D. N.D. +0.2
phage Ra1_0.1 +6.1 N.D. N.D. N.D. -0.1
phage Ra3_1 +5.9 N.D. N.D. N.D. +0.1
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ABZR87_RS07060
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ABZR87_RS07065
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