Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS07045 and ABZR87_RS07050 are separated by 73 nucleotidesABZR87_RS07050 and ABZR87_RS07055 are separated by 346 nucleotidesABZR87_RS07055 and ABZR87_RS07060 are separated by 50 nucleotidesABZR87_RS07060 and ABZR87_RS07065 are separated by 96 nucleotides ABZR87_RS07045: ABZR87_RS07045 - HPr(Ser) kinase/phosphatase, at 1,488,049 to 1,489,023 _RS07045 ABZR87_RS07050: ABZR87_RS07050 - PTS IIA-like nitrogen regulatory protein PtsN, at 1,489,097 to 1,489,552 _RS07050 ABZR87_RS07055: ABZR87_RS07055 - ribosome-associated translation inhibitor RaiA, at 1,489,899 to 1,490,252 _RS07055 ABZR87_RS07060: ABZR87_RS07060 - RNA polymerase factor sigma-54, at 1,490,303 to 1,491,814 _RS07060 ABZR87_RS07065: ABZR87_RS07065 - LPS export ABC transporter ATP-binding protein, at 1,491,911 to 1,492,699 _RS07065
Group Condition ABZR87_RS07045 ABZR87_RS07050 ABZR87_RS07055 ABZR87_RS07060 ABZR87_RS07065
nitrogen source nitrogen source nitrate 5mM N.D. -5.1 -0.2 -5.2 N.D.
carbon source propionate (C) N.D. -4.5 -0.1 -4.5 N.D.
carbon source Trans-2-methyl-2-butenoic (C) N.D. -4.3 -0.0 -4.8 N.D.
nitrogen source nitrogen source nitrate 20mM N.D. -3.1 -0.5 -5.0 N.D.
nitrogen source nitrogen source nitrate 20mM N.D. -3.1 -0.2 -5.1 N.D.
carbon source Trans-2-methyl-2-butenoic (C) N.D. -3.6 -0.0 -4.5 N.D.
carbon source Heptanoic (C) N.D. -2.6 -0.4 -5.1 N.D.
carbon source Heptanoic (C) N.D. -2.8 -0.3 -4.9 N.D.
soil soil sample 5; outgrowth in LB N.D. -3.7 -1.2 -2.6 N.D.
nitrogen source nitrogen source nitrate 5mM N.D. -2.2 +0.0 -5.1 N.D.
carbon source propionate (C) N.D. -2.9 -0.1 -4.1 N.D.
carbon source Valeric (C) N.D. -2.8 -0.1 -4.2 N.D.
carbon source Valeric (C) N.D. -3.0 -0.0 -3.8 N.D.
soil soil sample 3; outgrowth in LB N.D. -3.6 -2.4 -0.7 N.D.
nitrogen source nitrogen source nitrite 0.5mM N.D. -4.8 +0.1 -1.9 N.D.
nitrogen source nitrogen source nitrite 5mM N.D. -2.9 -0.4 -3.3 N.D.
carbon source propionate (C) N.D. -1.6 -0.6 -4.2 N.D.
soil soil sample 8; outgrowth in LB N.D. -4.2 -1.7 -0.4 N.D.
soil soil sample 2; outgrowth in LB N.D. -3.8 -1.4 -0.8 N.D.
carbon source propionate (C) N.D. -1.0 -0.5 -4.4 N.D.
soil soil sample 1; outgrowth in LB N.D. -3.5 -1.3 -1.1 N.D.
soil soil sample 7; outgrowth in LB N.D. -4.1 -1.5 -0.2 N.D.
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. -4.1 -1.3 -0.3 N.D.
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. -3.8 -2.3 +0.5 N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -3.7 -2.4 +0.8 N.D.
soil soil EcoFAB sample 2; outgrowth in LB N.D. -3.7 -2.6 +1.1 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. -2.8 -1.8 +1.8 N.D.
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. -3.0 -1.2 +2.0 N.D.
phage Ra3_1 N.D. -1.0 +0.1 +5.9 N.D.
phage Ra1_0.1 N.D. +0.2 +0.1 +6.1 N.D.
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