Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS07000 and ABZR87_RS07005 are separated by 14 nucleotidesABZR87_RS07005 and ABZR87_RS07010 overlap by 1 nucleotidesABZR87_RS07010 and ABZR87_RS07015 are separated by 101 nucleotidesABZR87_RS07015 and ABZR87_RS07020 are separated by 291 nucleotides ABZR87_RS07000: ABZR87_RS07000 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase, at 1,477,835 to 1,478,704 _RS07000 ABZR87_RS07005: ABZR87_RS07005 - lipoprotein insertase outer membrane protein LolB, at 1,478,719 to 1,479,342 _RS07005 ABZR87_RS07010: ABZR87_RS07010 - tetratricopeptide repeat protein, at 1,479,342 to 1,481,279 _RS07010 ABZR87_RS07015: ABZR87_RS07015 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 1,481,381 to 1,482,256 _RS07015 ABZR87_RS07020: ABZR87_RS07020 - dynamin-like GTPase family protein, at 1,482,548 to 1,484,491 _RS07020
Group Condition ABZR87_RS07000 ABZR87_RS07005 ABZR87_RS07010 ABZR87_RS07015 ABZR87_RS07020
phage Ra3_0.1 N.D. -1.1 -0.3 +0.6 -6.4
phage Ra1_0.1 N.D. -1.7 -0.8 +1.8 -5.1
phage Ra1_0.01 N.D. -0.6 -0.3 +0.6 -5.3
phage Ra3_1 N.D. -0.9 -0.6 +2.0 -5.7
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -4.0 -1.5 +0.2 +0.9
phage Ra3_0.01 N.D. -0.4 +0.1 +0.0 -4.0
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. -4.3 -0.6 +0.1 +0.6
soil soil EcoFAB sample 2; outgrowth in LB N.D. -3.9 -0.4 +0.0 +1.6
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. -3.1 -0.6 -0.0 +1.2
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. -4.0 -0.4 +0.2 +2.1
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. -2.7 -0.6 +0.0 +1.2
root root EcoFAB sample 1; outgrowth in LB N.D. -3.6 -0.7 -0.1 +2.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -3.0 -0.4 +0.1 +1.7
soil soil sample 6; outgrowth in LB N.D. -2.0 -0.7 +0.0 +1.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -2.2 -0.5 -0.1 +1.9
soil soil sample 3; outgrowth in LB N.D. -2.9 -0.4 -0.0 +2.5
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. -2.5 -0.4 +0.0 +2.4
root root EcoFAB sample 2; outgrowth in LB N.D. -2.2 -0.4 +0.1 +3.8
rhizosphere rhizosphere sample 5; outgrowth in LB N.D. -2.9 -0.5 +0.1 +4.8
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. -1.9 -0.3 +0.0 +4.8
root root sample 4; outgrowth in LB N.D. -1.8 -0.3 -0.1 +5.0
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -1.5 +0.0 -0.0 +4.8
rhizosphere rhizosphere sample 4; outgrowth in LB N.D. -1.1 -0.5 +0.2 +4.8
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. -0.9 -0.0 -0.1 +4.4
rhizosphere rhizosphere sample 6; outgrowth in LB N.D. -1.0 -0.6 -0.1 +5.3
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.1 -0.4 +0.1 +4.7
root root sample 5; outgrowth in LB N.D. -1.6 -0.0 -0.0 +6.2
rhizosphere rhizosphere sample 9; outgrowth in LB N.D. +0.6 -0.2 -0.2 +4.3
root root sample 6; outgrowth in LB N.D. -1.2 -0.6 +0.0 +6.7
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. -0.3 -0.3 -0.4 +6.0
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