Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS06970 and ABZR87_RS06975 are separated by 67 nucleotidesABZR87_RS06975 and ABZR87_RS06980 are separated by 24 nucleotidesABZR87_RS06980 and ABZR87_RS06985 are separated by 170 nucleotidesABZR87_RS06985 and ABZR87_RS06990 are separated by 152 nucleotides ABZR87_RS06970: ABZR87_RS06970 - YfhL family 4Fe-4S dicluster ferredoxin, at 1,474,133 to 1,474,396 _RS06970 ABZR87_RS06975: ABZR87_RS06975 - DUF4124 domain-containing protein, at 1,474,464 to 1,475,102 _RS06975 ABZR87_RS06980: ABZR87_RS06980 - aminoacyl-tRNA hydrolase, at 1,475,127 to 1,475,729 _RS06980 ABZR87_RS06985: ABZR87_RS06985 - 50S ribosomal protein L25/general stress protein Ctc, at 1,475,900 to 1,476,526 _RS06985 ABZR87_RS06990: ABZR87_RS06990 - ribose-phosphate pyrophosphokinase, at 1,476,679 to 1,477,629 _RS06990
Group Condition ABZR87_RS06970 ABZR87_RS06975 ABZR87_RS06980 ABZR87_RS06985 ABZR87_RS06990
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -1.4 -0.2 N.D. N.D. N.D.
rhizosphere rhizosphere sample 7; outgrowth in LB -1.5 +0.2 N.D. N.D. N.D.
carbon source Sebacic (C) -1.2 -0.0 N.D. N.D. N.D.
nitrogen source nitrogen source nitrite 0.5mM -1.2 +0.3 N.D. N.D. N.D.
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.8 -0.2 N.D. N.D. N.D.
root root sample 4; outgrowth in LB -1.1 +0.2 N.D. N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -0.3 N.D. N.D. N.D.
soil soil EcoFAB sample 2; outgrowth in LB -0.6 -0.3 N.D. N.D. N.D.
phage Ra1_0.1 -0.7 -0.1 N.D. N.D. N.D.
soil soil sample 6; outgrowth in LB -0.8 +0.0 N.D. N.D. N.D.
rhizosphere rhizosphere sample 3; outgrowth in LB -0.6 -0.2 N.D. N.D. N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 +0.0 N.D. N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 +0.1 N.D. N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.4 -0.3 N.D. N.D. N.D.
carbon source Octanoic (C) -0.8 +0.1 N.D. N.D. N.D.
rhizosphere rhizosphere sample 8; outgrowth in LB -0.6 -0.1 N.D. N.D. N.D.
root root sample 6; outgrowth in LB -0.6 -0.1 N.D. N.D. N.D.
nitrogen source nitrogen source nitrite 5mM -0.4 -0.2 N.D. N.D. N.D.
carbon source Octanoic (C) -0.4 -0.2 N.D. N.D. N.D.
root root EcoFAB sample 1; outgrowth in LB -0.7 +0.1 N.D. N.D. N.D.
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.6 +0.1 N.D. N.D. N.D.
soil soil sample 2; outgrowth in LB -0.6 +0.1 N.D. N.D. N.D.
carbon source butyrate (C) -0.6 +0.1 N.D. N.D. N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.8 +0.4 N.D. N.D. N.D.
soil soil EcoFAB sample 1; outgrowth in LB -0.7 +0.4 N.D. N.D. N.D.
soil soil sample 7; outgrowth in LB -0.4 +0.2 N.D. N.D. N.D.
root root EcoFAB sample 2; outgrowth in LB -0.4 +0.3 N.D. N.D. N.D.
nitrogen source nitrogen source nitrate 5mM -0.5 +0.4 N.D. N.D. N.D.
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.4 +0.5 N.D. N.D. N.D.
carbon source L-Glutamic (C) +0.5 -0.1 N.D. N.D. N.D.
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