Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS06945 and ABZR87_RS06950 are separated by 60 nucleotidesABZR87_RS06950 and ABZR87_RS06955 overlap by 1 nucleotidesABZR87_RS06955 and ABZR87_RS06960 are separated by 94 nucleotidesABZR87_RS06960 and ABZR87_RS06965 are separated by 197 nucleotides ABZR87_RS06945: ABZR87_RS06945 - signal recognition particle-docking protein FtsY, at 1,468,525 to 1,469,721 _RS06945 ABZR87_RS06950: ABZR87_RS06950 - pitrilysin family protein, at 1,469,782 to 1,471,278 _RS06950 ABZR87_RS06955: ABZR87_RS06955 - pitrilysin family protein, at 1,471,278 to 1,472,630 _RS06955 ABZR87_RS06960: ABZR87_RS06960 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 1,472,725 to 1,473,381 _RS06960 ABZR87_RS06965: ABZR87_RS06965 - pantetheine-phosphate adenylyltransferase, at 1,473,579 to 1,474,082 _RS06965
Group Condition ABZR87_RS06945 ABZR87_RS06950 ABZR87_RS06955 ABZR87_RS06960 ABZR87_RS06965
carbon source Dodecandioic (C) N.D. -5.0 -5.6 +0.1 N.D.
carbon source Octanoic (C) N.D. -4.3 -5.0 +0.3 N.D.
carbon source Dodecandioic (C) N.D. -4.4 -4.7 +0.7 N.D.
carbon source Octanoic (C) N.D. -4.7 -4.7 +1.2 N.D.
carbon source 4-Hydroxybenzoic Acid (C) N.D. -4.6 -2.8 -0.1 N.D.
carbon source Sebacic (C) N.D. -3.6 -3.3 +0.7 N.D.
carbon source Heptanoic (C) N.D. -3.3 -2.0 +0.6 N.D.
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -2.0 -1.5 -0.3 N.D.
carbon source Heptanoic (C) N.D. -2.0 -2.1 +0.5 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.6 -0.8 -0.6 N.D.
carbon source Hexanoic (C) N.D. -0.9 -1.0 -0.0 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.9 -0.8 -0.2 N.D.
carbon source Hexanoic (C) N.D. -0.9 -0.8 +0.0 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 -0.3 -0.9 N.D.
soil soil EcoFAB sample 2; outgrowth in LB N.D. -0.3 -0.4 -0.9 N.D.
soil soil sample 9; outgrowth in LB N.D. -0.4 -0.4 -0.7 N.D.
no_plant_soil no_plant_soil sample 1; outgrowth in LB N.D. -0.3 -0.3 -0.8 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.5 -0.7 -0.2 N.D.
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. -0.4 -0.3 -0.6 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 -0.6 -0.6 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.4 -0.6 -0.3 N.D.
rhizosphere rhizosphere sample 3; outgrowth in LB N.D. +0.1 -0.3 -1.0 N.D.
carbon source Azelaic (C) N.D. -0.1 +0.1 -1.3 N.D.
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) N.D. +0.1 +0.1 -1.1 N.D.
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.6 -0.5 +0.2 N.D.
root root EcoFAB sample 2; outgrowth in LB N.D. -1.2 -0.3 +0.5 N.D.
root root sample 4; outgrowth in LB N.D. -0.6 -0.3 +0.3 N.D.
carbon source Lauric (C) N.D. -0.5 -0.6 +0.7 N.D.
carbon source Protocatechuic Acid (C) N.D. +0.5 +0.7 +0.3 N.D.
phage Ra3_1 N.D. +0.4 +0.2 +0.9 N.D.
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