Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS06845 and ABZR87_RS06850 are separated by 69 nucleotidesABZR87_RS06850 and ABZR87_RS06855 are separated by 66 nucleotidesABZR87_RS06855 and ABZR87_RS06860 are separated by 199 nucleotidesABZR87_RS06860 and ABZR87_RS06865 are separated by 240 nucleotides ABZR87_RS06845: ABZR87_RS06845 - heme o synthase, at 1,448,943 to 1,449,884 _RS06845 ABZR87_RS06850: ABZR87_RS06850 - SCO family protein, at 1,449,954 to 1,450,559 _RS06850 ABZR87_RS06855: ABZR87_RS06855 - RNA polymerase sigma factor RpoH, at 1,450,626 to 1,451,555 _RS06855 ABZR87_RS06860: ABZR87_RS06860 - diguanylate cyclase, at 1,451,755 to 1,454,673 _RS06860 ABZR87_RS06865: ABZR87_RS06865 - OsmC family protein, at 1,454,914 to 1,455,318 _RS06865
Group Condition ABZR87_RS06845 ABZR87_RS06850 ABZR87_RS06855 ABZR87_RS06860 ABZR87_RS06865
carbon source Octanoic (C) -4.0 -2.3 -2.1 +0.1 -0.1
carbon source Heptanoic (C) -4.9 -1.0 -0.8 -0.2 +0.0
carbon source Heptanoic (C) -4.2 -1.6 -0.9 +0.1 +0.1
soil soil EcoFAB sample 1; outgrowth in LB -5.2 -0.4 -0.9 -0.2 +0.2
carbon source Octanoic (C) -4.1 -1.8 -1.0 -0.0 +0.8
carbon source Sebacic (C) -4.3 -1.8 -0.2 -0.0 +0.4
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -3.6 -0.8 -1.3 -0.2 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.7 -0.5 -1.8 +0.8 -0.5
carbon source 4-Hydroxybenzoic Acid (C) -3.6 -2.8 +0.5 -0.2 +0.6
root root EcoFAB sample 2; outgrowth in LB -2.9 -0.5 -1.1 +0.1 -0.5
soil soil sample 9; outgrowth in LB -1.9 -0.7 -1.4 -0.2 -0.6
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -4.0 +0.2 -0.7 -0.1 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -3.8 -0.3 -0.6 -0.0 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.9 -0.3 -1.2 +0.4 -0.3
soil soil EcoFAB sample 2; outgrowth in LB -3.4 -0.4 -0.4 +0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.7 -0.7 -1.0 +0.3 -0.2
no_plant_soil no_plant_soil sample 1; outgrowth in LB -2.6 -1.0 -0.7 +0.4 -0.2
carbon source Sebacic (C) -3.2 -0.6 -0.3 +0.0 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -3.0 -0.8 -1.0 +0.7 +0.1
root root EcoFAB sample 1; outgrowth in LB -3.6 -0.1 -0.4 +0.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.3 -0.7 -1.2 +0.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.8 -0.4 -0.6 +0.6 -0.4
no_plant_soil no_plant_soil sample 3; outgrowth in LB -2.6 -1.5 -0.8 +1.5 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.3 -0.7 -1.6 +0.4 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.7 -0.3 -0.8 +0.4 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.0 -0.4 -0.9 +0.4 -0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.9 -0.5 -0.1 +0.4 -0.3
soil soil sample 5; outgrowth in LB -2.1 -0.8 -1.2 +0.7 -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -3.4 +0.1 -0.5 +0.8 -0.2
no_plant_soil no_plant_soil sample 2; outgrowth in LB -2.5 -1.0 -0.7 +1.8 -0.2
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