Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS06830 and ABZR87_RS06835 are separated by 52 nucleotidesABZR87_RS06835 and ABZR87_RS06840 are separated by 3 nucleotidesABZR87_RS06840 and ABZR87_RS06845 are separated by 20 nucleotidesABZR87_RS06845 and ABZR87_RS06850 are separated by 69 nucleotides ABZR87_RS06830: ABZR87_RS06830 - SURF1 family protein, at 1,446,348 to 1,447,118 _RS06830 ABZR87_RS06835: ABZR87_RS06835 - cytochrome c oxidase subunit I, at 1,447,171 to 1,447,827 _RS06835 ABZR87_RS06840: ABZR87_RS06840 - COX15/CtaA family protein, at 1,447,831 to 1,448,922 _RS06840 ABZR87_RS06845: ABZR87_RS06845 - heme o synthase, at 1,448,943 to 1,449,884 _RS06845 ABZR87_RS06850: ABZR87_RS06850 - SCO family protein, at 1,449,954 to 1,450,559 _RS06850
Group Condition ABZR87_RS06830 ABZR87_RS06835 ABZR87_RS06840 ABZR87_RS06845 ABZR87_RS06850
carbon source Octanoic (C) -3.2 -3.6 -2.9 -4.1 -1.8
carbon source Octanoic (C) -1.6 -3.6 -3.7 -4.0 -2.3
carbon source Heptanoic (C) -1.8 -2.6 -3.5 -4.2 -1.6
carbon source Heptanoic (C) -1.7 -2.3 -3.7 -4.9 -1.0
soil soil EcoFAB sample 1; outgrowth in LB -1.5 -1.3 -4.2 -5.2 -0.4
carbon source Sebacic (C) -2.0 -2.1 -2.3 -4.3 -1.8
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.8 -0.7 -3.8 -3.6 -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 -1.6 -2.8 -3.7 -0.5
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -1.0 -0.7 -2.4 -3.8 -0.3
carbon source 4-Hydroxybenzoic Acid (C) -0.3 -0.3 -0.6 -3.6 -2.8
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.2 -0.7 -2.7 -4.0 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -0.7 -1.9 -3.0 -0.8
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.3 -0.6 -1.8 -2.6 -1.5
carbon source Sebacic (C) -0.9 -0.7 -1.2 -3.2 -0.6
root root EcoFAB sample 1; outgrowth in LB -0.3 -0.8 -1.5 -3.6 -0.1
root root EcoFAB sample 2; outgrowth in LB -1.0 -0.3 -1.5 -2.9 -0.5
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.3 -0.2 -2.2 -3.4 +0.1
soil soil EcoFAB sample 2; outgrowth in LB -0.6 -0.4 -1.2 -3.4 -0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -0.9 -1.0 -2.9 -0.5
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -1.0 -0.7 -1.8 -2.2 -0.3
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.2 -0.5 -1.5 -2.6 -1.0
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.3 -0.4 -1.6 -2.5 -1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 -0.7 -1.4 -2.7 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.9 -2.2 -2.0 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 -0.7 -1.5 -2.7 -0.7
carbon source Hexanoic (C) -0.5 -0.7 -0.7 -2.6 -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.6 -1.1 -2.8 -0.4
carbon source Azelaic (C) -0.8 -0.5 -0.7 -3.0 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 -0.3 -1.9 -2.3 -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.7 -1.2 -2.9 -0.3
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ABZR87_RS06830
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ABZR87_RS06835
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ABZR87_RS06840		 remove
ABZR87_RS06845
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ABZR87_RS06850
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