Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS06685 and ABZR87_RS06690 are separated by 531 nucleotidesABZR87_RS06690 and ABZR87_RS06695 are separated by 46 nucleotidesABZR87_RS06695 and ABZR87_RS06700 are separated by 30 nucleotidesABZR87_RS06700 and ABZR87_RS06705 are separated by 367 nucleotides ABZR87_RS06685: ABZR87_RS06685 - accessory factor UbiK family protein, at 1,421,980 to 1,422,237 _RS06685 ABZR87_RS06690: ABZR87_RS06690 - TorF family putative porin, at 1,422,769 to 1,423,584 _RS06690 ABZR87_RS06695: ABZR87_RS06695 - P-II family nitrogen regulator, at 1,423,631 to 1,423,969 _RS06695 ABZR87_RS06700: ABZR87_RS06700 - ammonium transporter, at 1,424,000 to 1,425,550 _RS06700 ABZR87_RS06705: ABZR87_RS06705 - glutamate--cysteine ligase, at 1,425,918 to 1,427,213 _RS06705
Group Condition ABZR87_RS06685 ABZR87_RS06690 ABZR87_RS06695 ABZR87_RS06700 ABZR87_RS06705
carbon source Octanoic (C) N.D. -0.0 -1.7 -0.2 -4.1
carbon source Heptanoic (C) N.D. -0.3 -1.1 -0.2 -4.1
carbon source Octanoic (C) N.D. +0.1 -1.3 -0.1 -3.6
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. -0.2 -1.2 +0.1 -3.6
carbon source Heptanoic (C) N.D. +0.0 -0.7 +0.1 -3.9
carbon source 4-Hydroxybenzoic Acid (C) N.D. +0.1 -0.4 +0.2 -4.5
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. -0.2 -0.9 +0.3 -3.6
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. -0.0 -0.8 +0.1 -3.4
soil soil EcoFAB sample 2; outgrowth in LB N.D. -0.2 -0.5 +0.1 -3.4
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. +0.1 -0.9 +0.3 -3.4
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. -0.1 -0.7 +0.2 -3.2
carbon source Trans-2-methyl-2-butenoic (C) N.D. -0.0 -0.4 -0.0 -3.3
carbon source Hexanoic (C) N.D. -0.1 -0.9 -0.1 -2.7
carbon source Trans-2-methyl-2-butenoic (C) N.D. +0.0 -0.5 -0.0 -3.1
carbon source butyrate (C) N.D. +0.1 -0.6 -0.1 -2.9
carbon source propionate (C) N.D. +0.0 -0.6 -0.0 -2.9
carbon source propionate (C) N.D. +0.1 -0.5 +0.0 -3.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB N.D. -0.1 -0.9 +0.2 -2.7
root root EcoFAB sample 2; outgrowth in LB N.D. -0.4 -0.7 +0.1 -2.4
carbon source Valeric (C) N.D. +0.0 -0.6 -0.1 -2.7
carbon source Sebacic (C) N.D. +0.4 -0.7 +0.0 -2.9
carbon source Hexanoic (C) N.D. +0.1 -0.6 -0.1 -2.7
root root EcoFAB sample 1; outgrowth in LB N.D. -0.1 -0.6 +0.2 -2.6
carbon source Protocatechuic Acid (C) N.D. +0.0 -0.2 -0.1 -2.9
carbon source propionate (C) N.D. -0.0 -0.5 -0.1 -2.5
soil soil sample 1; outgrowth in LB N.D. -0.1 -0.6 +0.1 -2.5
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.2 -0.9 +0.3 -2.2
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -0.0 -1.0 +0.0 -2.1
rhizosphere rhizosphere sample 4; outgrowth in LB N.D. -0.2 -0.6 +0.1 -2.2
soil soil EcoFAB sample 1; outgrowth in LB N.D. -0.1 -0.1 +0.4 -2.8
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