Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 129 experiments or choose conditions or try the comparative fitness browser

500 ntABZR87_RS06680 and ABZR87_RS06685 are separated by 170 nucleotidesABZR87_RS06685 and ABZR87_RS06690 are separated by 531 nucleotidesABZR87_RS06690 and ABZR87_RS06695 are separated by 46 nucleotidesABZR87_RS06695 and ABZR87_RS06700 are separated by 30 nucleotides ABZR87_RS06680: ABZR87_RS06680 - hypothetical protein, at 1,421,297 to 1,421,809 _RS06680 ABZR87_RS06685: ABZR87_RS06685 - accessory factor UbiK family protein, at 1,421,980 to 1,422,237 _RS06685 ABZR87_RS06690: ABZR87_RS06690 - TorF family putative porin, at 1,422,769 to 1,423,584 _RS06690 ABZR87_RS06695: ABZR87_RS06695 - P-II family nitrogen regulator, at 1,423,631 to 1,423,969 _RS06695 ABZR87_RS06700: ABZR87_RS06700 - ammonium transporter, at 1,424,000 to 1,425,550 _RS06700
Group Condition ABZR87_RS06680 ABZR87_RS06685 ABZR87_RS06690 ABZR87_RS06695 ABZR87_RS06700
nitrogen source nitrogen source nitrate 5mM -0.1 N.D. -0.3 -1.1 -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.4 N.D. +0.2 -0.7 -0.1
carbon source D-Xylose (C) -0.4 N.D. -0.5 -0.4 -0.5
carbon source Heptanoic (C) -0.0 N.D. -0.3 -1.1 -0.2
carbon source Octanoic (C) +0.3 N.D. -0.0 -1.7 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.4 N.D. -0.2 -1.2 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB -0.7 N.D. -0.0 -1.0 +0.0
nitrogen source nitrogen source nitrate 20mM -0.2 N.D. -0.3 -0.5 -0.6
nitrogen source nitrogen source nitrite 1mM -0.6 N.D. -0.2 -0.3 -0.3
soil soil EcoFAB sample 2; outgrowth in LB -0.6 N.D. -0.2 -0.5 +0.1
nitrogen source nitrogen source nitrate 5mM +0.2 N.D. -0.2 -0.5 -0.6
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 N.D. -0.0 -1.1 -0.6
soil soil sample 8; outgrowth in LB -0.4 N.D. -0.2 -0.7 +0.2
rhizosphere rhizosphere sample 7; outgrowth in LB -0.1 N.D. +0.0 -1.2 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.2 N.D. -0.2 -0.9 +0.3
rhizosphere rhizosphere sample 8; outgrowth in LB -0.3 N.D. +0.1 -0.9 +0.2
rhizosphere rhizosphere sample 9; outgrowth in LB +0.3 N.D. -0.0 -1.0 +0.1
root root EcoFAB sample 2; outgrowth in LB +0.3 N.D. -0.4 -0.7 +0.1
carbon source 4-Hydroxybenzoic Acid (C) -0.6 N.D. +0.1 -0.4 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.2 N.D. +0.1 -0.9 +0.3
rhizosphere rhizosphere sample 2; outgrowth in LB +0.3 N.D. -0.2 -0.9 +0.3
rhizosphere rhizosphere sample 3; outgrowth in LB +0.3 N.D. -0.4 -0.6 +0.1
carbon source Octanoic (C) +0.8 N.D. +0.1 -1.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 N.D. +0.1 -0.8 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.0 N.D. -0.1 -0.9 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 N.D. +0.1 -0.7 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.0 N.D. -0.0 -0.6 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.8 N.D. +0.1 -0.6 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.1 N.D. -0.1 -0.7 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.5 N.D. -0.1 -0.2 -0.1
remove
ABZR87_RS06680
plot		 remove
ABZR87_RS06685
plot		 remove
ABZR87_RS06690		 remove
ABZR87_RS06695
plot		 remove
ABZR87_RS06700
plot