Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS06610 and ABZR87_RS06615 are separated by 91 nucleotidesABZR87_RS06615 and ABZR87_RS06620 are separated by 35 nucleotidesABZR87_RS06620 and ABZR87_RS06625 are separated by 451 nucleotidesABZR87_RS06625 and ABZR87_RS06630 are separated by 101 nucleotides ABZR87_RS06610: ABZR87_RS06610 - D-alanyl-D-alanine carboxypeptidase family protein, at 1,406,406 to 1,407,608 _RS06610 ABZR87_RS06615: ABZR87_RS06615 - alpha/beta hydrolase, at 1,407,700 to 1,408,347 _RS06615 ABZR87_RS06620: ABZR87_RS06620 - ferredoxin, at 1,408,383 to 1,408,712 _RS06620 ABZR87_RS06625: ABZR87_RS06625 - dicarboxylate/amino acid:cation symporter, at 1,409,164 to 1,410,453 _RS06625 ABZR87_RS06630: ABZR87_RS06630 - sensor histidine kinase, at 1,410,555 to 1,412,573 _RS06630
Group Condition ABZR87_RS06610 ABZR87_RS06615 ABZR87_RS06620 ABZR87_RS06625 ABZR87_RS06630
carbon source succinate (C) +0.2 N.D. +0.4 -5.2 -1.4
carbon source succinate (C) +0.1 N.D. +0.4 -3.1 -0.8
carbon source Lauric (C) -2.1 N.D. -0.0 -0.2 -0.1
carbon source Octanoic (C) -0.8 N.D. -0.1 -0.9 -0.3
carbon source Octanoic (C) -0.7 N.D. -0.5 -0.7 -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.1 N.D. -0.6 -0.2 -0.5
root root sample 6; outgrowth in LB -0.2 N.D. -0.7 -0.0 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.0 N.D. -0.1 -0.5 -0.4
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.0 N.D. -0.0 -0.5 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.0 N.D. -0.0 -0.6 -0.3
rhizosphere rhizosphere sample 9; outgrowth in LB +0.1 N.D. -0.6 -0.0 -0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.2 N.D. -0.1 -0.4 -0.2
carbon source Sebacic (C) +0.3 N.D. -0.4 +0.2 -0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 N.D. +0.0 -0.3 -0.3
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.2 N.D. -0.5 +0.4 +0.3
carbon source Protocatechuic Acid (C) +0.6 N.D. -0.4 -0.3 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 N.D. +0.1 -0.4 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.4 N.D. +0.2 -0.4 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.6 N.D. -0.1 -0.2 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 N.D. +0.3 +0.0 -0.3
carbon source Heptanoic (C) +0.8 N.D. +0.4 -0.8 -0.1
carbon source Disodium Glutarate (C) +0.2 N.D. -0.0 -0.3 +0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 N.D. -0.2 -0.1 +0.2
carbon source Dodecandioic (C) +0.3 N.D. +0.3 -0.2 +0.1
carbon source Heptanoic (C) +0.8 N.D. +0.6 -0.8 -0.0
carbon source Protocatechuic Acid (C) +0.9 N.D. +0.2 -0.3 +0.1
carbon source Pimelic (C) +0.5 N.D. +0.3 +0.1 +0.1
carbon source Pimelic (C) +1.0 N.D. +0.3 -0.2 -0.0
carbon source Pimelic (C) +1.0 N.D. +0.4 -0.2 -0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.3 N.D. +0.7 -0.0 +0.3
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