Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS06580 and ABZR87_RS06585 are separated by 76 nucleotidesABZR87_RS06585 and ABZR87_RS06590 are separated by 42 nucleotidesABZR87_RS06590 and ABZR87_RS06595 are separated by 161 nucleotidesABZR87_RS06595 and ABZR87_RS06600 are separated by 150 nucleotides ABZR87_RS06580: ABZR87_RS06580 - hypothetical protein, at 1,402,090 to 1,402,551 _RS06580 ABZR87_RS06585: ABZR87_RS06585 - lipoyl synthase, at 1,402,628 to 1,403,629 _RS06585 ABZR87_RS06590: ABZR87_RS06590 - lipoyl(octanoyl) transferase LipB, at 1,403,672 to 1,404,361 _RS06590 ABZR87_RS06595: ABZR87_RS06595 - DUF2917 domain-containing protein, at 1,404,523 to 1,404,882 _RS06595 ABZR87_RS06600: ABZR87_RS06600 - transcriptional regulator GcvA, at 1,405,033 to 1,405,995 _RS06600
Group Condition ABZR87_RS06580 ABZR87_RS06585 ABZR87_RS06590 ABZR87_RS06595 ABZR87_RS06600
carbon source Octanoic (C) -0.7 N.D. N.D. -3.3 -0.5
carbon source Sebacic (C) -1.2 N.D. N.D. -0.2 -0.6
carbon source 4-Hydroxybenzoic Acid (C) -0.4 N.D. N.D. -0.5 -0.6
nitrogen source nitrogen source nitrate 20mM +0.1 N.D. N.D. -1.3 -0.2
nitrogen source nitrogen source nitrate 5mM +0.1 N.D. N.D. -1.5 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 N.D. N.D. -1.0 -0.2
carbon source Dodecandioic (C) -1.0 N.D. N.D. +0.1 -0.1
carbon source Dodecandioic (C) -1.0 N.D. N.D. +0.5 -0.2
soil soil EcoFAB sample 1; outgrowth in LB +0.1 N.D. N.D. +0.5 -1.2
no_plant_soil no_plant_soil sample 1; outgrowth in LB +0.0 N.D. N.D. +0.5 -0.9
soil soil EcoFAB sample 2; outgrowth in LB -0.1 N.D. N.D. +0.6 -0.7
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.0 N.D. N.D. +0.7 -0.7
root root EcoFAB sample 2; outgrowth in LB -0.0 N.D. N.D. +0.9 -0.9
root root EcoFAB sample 1; outgrowth in LB -0.1 N.D. N.D. +0.7 -0.4
carbon source Hexanoic (C) -0.3 N.D. N.D. +0.7 -0.1
carbon source Hexanoic (C) -0.3 N.D. N.D. +0.8 -0.2
carbon source L-Glutamic (C) +0.2 N.D. N.D. +1.0 -0.5
carbon source Suberic (C) -0.1 N.D. N.D. +1.0 -0.2
carbon source Azelaic (C) -0.0 N.D. N.D. +1.2 -0.2
carbon source propionate (C) +0.0 N.D. N.D. +1.1 -0.1
rhizosphere rhizosphere sample 9; outgrowth in LB -0.0 N.D. N.D. +1.4 -0.3
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.1 N.D. N.D. +0.9 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.0 N.D. N.D. +0.8 +0.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.0 N.D. N.D. +2.0 -0.8
carbon source D-Glucose (C) -0.0 N.D. N.D. +1.4 +0.1
nitrogen source nitrogen source nitrite 5mM +0.1 N.D. N.D. +1.0 +0.5
carbon source Pimelic (C) -0.1 N.D. N.D. +1.5 +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB +0.0 N.D. N.D. +1.8 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.0 N.D. N.D. +2.4 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 N.D. N.D. +3.2 -0.3
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