Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS06510 and ABZR87_RS06515 are separated by 187 nucleotidesABZR87_RS06515 and ABZR87_RS06520 overlap by 4 nucleotidesABZR87_RS06520 and ABZR87_RS06525 overlap by 1 nucleotidesABZR87_RS06525 and ABZR87_RS06530 are separated by 9 nucleotides ABZR87_RS06510: ABZR87_RS06510 - biotin--[acetyl-CoA-carboxylase] ligase, at 1,385,337 to 1,386,218 _RS06510 ABZR87_RS06515: ABZR87_RS06515 - ABC transporter permease, at 1,386,406 to 1,387,530 _RS06515 ABZR87_RS06520: ABZR87_RS06520 - ABC transporter ATP-binding protein, at 1,387,527 to 1,388,408 _RS06520 ABZR87_RS06525: ABZR87_RS06525 - MlaD family protein, at 1,388,408 to 1,389,376 _RS06525 ABZR87_RS06530: ABZR87_RS06530 - ABC-type transport auxiliary lipoprotein family protein, at 1,389,386 to 1,390,060 _RS06530
Group Condition ABZR87_RS06510 ABZR87_RS06515 ABZR87_RS06520 ABZR87_RS06525 ABZR87_RS06530
carbon source Octanoic (C) N.D. -1.1 -1.4 -0.1 -0.7
carbon source Octanoic (C) N.D. -0.7 -0.4 -0.9 -0.9
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. -0.2 -0.4 -0.6 -0.4
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB N.D. +0.1 -0.6 -0.4 -0.6
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. -0.8 +0.1 -0.4 -0.3
carbon source Lauric (C) N.D. -0.4 -0.3 -0.3 -0.3
nitrogen source nitrogen source nitrite 0.5mM N.D. -0.4 -0.3 -0.0 -0.3
soil soil EcoFAB sample 1; outgrowth in LB N.D. -0.3 -0.3 +0.2 -0.4
carbon source Hexanoic (C) N.D. +0.0 -0.7 +0.2 -0.1
carbon source Protocatechuic Acid (C) N.D. +0.2 -0.8 -0.1 +0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.6 -0.1 +0.2 -0.1
nitrogen source nitrogen source nitrite 0.5mM N.D. +0.2 -0.6 +0.1 -0.1
carbon source 4-Hydroxybenzoic Acid (C) N.D. -0.1 +0.3 -0.2 -0.4
soil soil sample 9; outgrowth in LB N.D. +0.0 +0.2 -0.2 -0.3
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. +0.3 -0.3 -0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 +0.3 -0.3 +0.1
root root sample 6; outgrowth in LB N.D. +0.6 +0.1 -0.4 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.2 -0.3 +0.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.0 -0.5 -0.1 +0.7
root root EcoFAB sample 2; outgrowth in LB N.D. +0.4 +0.1 +0.2 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.1 -0.3 +0.5 -0.1
nitrogen source nitrogen source nitrite 5mM N.D. +0.4 -0.2 +0.1 +0.0
soil soil sample 7; outgrowth in LB N.D. +0.2 +0.4 -0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.3 +0.8 +0.5 -0.6
rhizosphere rhizosphere sample 6; outgrowth in LB N.D. +0.4 +0.1 +0.1 -0.2
root root sample 4; outgrowth in LB N.D. +0.5 -0.3 +0.3 +0.1
rhizosphere rhizosphere sample 8; outgrowth in LB N.D. +0.2 +0.7 -0.1 -0.1
root root sample 5; outgrowth in LB N.D. +0.1 -0.3 +0.6 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.7 +0.1 -0.0 +0.1
nitrogen source nitrogen source nitrate 5mM N.D. +0.6 +0.2 +0.0 +0.2
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