Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS06410 and ABZR87_RS06415 are separated by 16 nucleotidesABZR87_RS06415 and ABZR87_RS06420 are separated by 1 nucleotidesABZR87_RS06420 and ABZR87_RS06425 are separated by 151 nucleotidesABZR87_RS06425 and ABZR87_RS06430 are separated by 112 nucleotides ABZR87_RS06410: ABZR87_RS06410 - methionine synthase, at 1,365,483 to 1,368,200 _RS06410 ABZR87_RS06415: ABZR87_RS06415 - VOC family protein, at 1,368,217 to 1,368,570 _RS06415 ABZR87_RS06420: ABZR87_RS06420 - homocysteine S-methyltransferase family protein, at 1,368,572 to 1,369,612 _RS06420 ABZR87_RS06425: ABZR87_RS06425 - rhodanese-like domain-containing protein, at 1,369,764 to 1,370,156 _RS06425 ABZR87_RS06430: ABZR87_RS06430 - DUF3567 domain-containing protein, at 1,370,269 to 1,370,526 _RS06430
Group Condition ABZR87_RS06410 ABZR87_RS06415 ABZR87_RS06420 ABZR87_RS06425 ABZR87_RS06430
root root sample 6; outgrowth in LB -0.6 -0.4 -0.4 -0.2 -0.4
soil soil sample 8; outgrowth in LB -0.3 -0.2 -0.5 -0.4 -0.4
soil soil sample 2; outgrowth in LB -0.4 -0.3 -0.4 -0.3 -0.1
soil soil EcoFAB sample 2; outgrowth in LB -0.2 -0.5 -0.2 +0.1 -0.5
soil soil EcoFAB sample 1; outgrowth in LB -0.9 +0.2 +0.1 -0.6 -0.0
rhizosphere rhizosphere sample 6; outgrowth in LB -0.3 -0.2 -0.3 -0.3 -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB -0.4 -0.1 -0.2 -0.3 -0.2
soil soil sample 4; outgrowth in LB -0.5 -0.3 -0.4 +0.0 -0.1
root root sample 4; outgrowth in LB -0.3 -0.5 -0.1 -0.0 -0.2
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.4 -0.2 -0.3 -0.2 -0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.3 +0.1 -0.3 -0.2 -0.4
rhizosphere rhizosphere sample 7; outgrowth in LB -0.4 +0.0 -0.4 -0.0 -0.3
soil soil sample 3; outgrowth in LB -0.3 -0.3 -0.5 +0.1 -0.1
carbon source D-Xylose (C) -0.1 -0.2 -0.2 -0.3 -0.4
nitrogen source nitrogen source nitrite 0.5mM -0.4 -0.1 -0.3 -0.2 +0.1
soil soil sample 9; outgrowth in LB -0.3 -0.3 -0.4 -0.1 +0.0
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.4 +0.2 -0.1 +0.1 -0.6
carbon source 1,2-Propanediol (C) -0.5 +0.0 -0.5 +0.2 -0.1
carbon source 3-Hydroxypropionate (C) -0.4 +0.2 -0.5 -0.0 -0.1
soil soil sample 1; outgrowth in LB -0.3 +0.0 -0.3 +0.2 -0.3
carbon source Heptanoic (C) +0.1 -0.2 +0.2 -0.1 -0.6
rhizosphere rhizosphere sample 8; outgrowth in LB -0.2 +0.0 -0.4 -0.2 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.2 +0.3 -0.2 +0.1 -0.5
rhizosphere rhizosphere sample 9; outgrowth in LB -0.4 +0.2 -0.3 -0.1 +0.2
nitrogen source nitrogen source nitrite 5mM -0.4 -0.0 -0.4 +0.1 +0.3
nitrogen source nitrogen source nitrate 20mM -0.1 +0.4 -0.2 -0.3 -0.1
carbon source Octanoic (C) +0.4 +0.1 +0.1 -0.2 -0.2
carbon source Suberic (C) +0.2 +0.3 -0.0 +0.3 -0.3
root root sample 5; outgrowth in LB -0.1 +1.0 -0.1 -0.3 +0.2
carbon source Octanoic (C) +0.5 +0.1 +0.1 +0.3 -0.3
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ABZR87_RS06415
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ABZR87_RS06430
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