Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS06310 and ABZR87_RS06315 are separated by 23 nucleotidesABZR87_RS06315 and ABZR87_RS06320 are separated by 158 nucleotidesABZR87_RS06320 and ABZR87_RS06325 are separated by 176 nucleotidesABZR87_RS06325 and ABZR87_RS06330 are separated by 184 nucleotides ABZR87_RS06310: ABZR87_RS06310 - carbonate dehydratase, at 1,348,001 to 1,348,681 _RS06310 ABZR87_RS06315: ABZR87_RS06315 - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 1,348,705 to 1,350,540 _RS06315 ABZR87_RS06320: ABZR87_RS06320 - isovaleryl-CoA dehydrogenase, at 1,350,699 to 1,351,880 _RS06320 ABZR87_RS06325: ABZR87_RS06325 - MerR family DNA-binding transcriptional regulator, at 1,352,057 to 1,352,554 _RS06325 ABZR87_RS06330: ABZR87_RS06330 - MBL fold metallo-hydrolase, at 1,352,739 to 1,353,818 _RS06330
Group Condition ABZR87_RS06310 ABZR87_RS06315 ABZR87_RS06320 ABZR87_RS06325 ABZR87_RS06330
carbon source Trans-2-methyl-2-butenoic (C) -1.2 -4.2 -3.0 -0.2 +0.2
carbon source Trans-2-methyl-2-butenoic (C) -1.0 -3.9 -2.6 -0.3 +0.1
carbon source Octanoic (C) -0.9 -2.7 -0.4 -2.3 +0.3
carbon source Octanoic (C) -0.2 -2.9 +0.1 -2.2 -0.2
carbon source Pimelic (C) -0.3 -4.6 +0.0 -0.3 +0.1
carbon source Beta-alanine (C) -0.0 -4.3 -0.0 -0.3 -0.1
carbon source Azelaic (C) -0.3 -3.8 -0.2 -0.7 +0.3
carbon source Beta-alanine (C) -0.1 -4.1 -0.1 -0.3 +0.0
carbon source Pimelic (C) +0.3 -4.2 +0.1 -0.4 +0.2
carbon source Sebacic (C) -0.8 -1.1 -0.1 -1.3 -0.5
soil soil sample 5; outgrowth in LB -0.4 -2.5 -0.3 -0.2 +0.0
carbon source Pimelic (C) -0.2 -2.3 +0.0 -0.8 +0.1
carbon source Pimelic (C) -0.3 -2.6 -0.1 -0.1 +0.1
carbon source Lauric (C) +0.1 -1.5 -0.3 -1.2 +0.1
carbon source Heptanoic (C) -1.6 -0.1 +0.2 -1.0 -0.2
rhizosphere rhizosphere sample 1; outgrowth in LB -0.6 -1.5 -0.2 -0.1 -0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -1.3 -0.7 -0.4 +0.2
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.2 -0.3 -1.7 -0.4 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -1.2 -0.5 +0.0 -0.0
soil soil sample 1; outgrowth in LB -0.5 -1.2 -0.2 -0.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -1.3 -0.3 -0.3 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.5 -1.2 -0.5 -0.2 +0.2
carbon source L-Glutamic (C) +0.2 -1.1 -0.7 -0.5 +0.1
soil soil EcoFAB sample 2; outgrowth in LB -1.1 -0.3 -0.5 -0.4 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -1.1 -0.3 -0.5 +0.4
root root EcoFAB sample 2; outgrowth in LB +0.3 -0.2 -0.9 -1.0 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.7 -1.4 -0.2 -0.6 -0.0
soil soil EcoFAB sample 1; outgrowth in LB -0.1 -0.5 -1.1 +0.2 +0.2
carbon source butyrate (C) +0.4 -1.0 +0.3 -0.7 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 -1.1 -0.1 +0.6 -0.0
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