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Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS06310 and ABZR87_RS06315 are separated by 23 nucleotides
ABZR87_RS06315 and ABZR87_RS06320 are separated by 158 nucleotides
ABZR87_RS06320 and ABZR87_RS06325 are separated by 176 nucleotides
ABZR87_RS06325 and ABZR87_RS06330 are separated by 184 nucleotides
ABZR87_RS06310: ABZR87_RS06310 - carbonate dehydratase, at 1,348,001 to 1,348,681
_RS06310
ABZR87_RS06315: ABZR87_RS06315 - bifunctional isocitrate dehydrogenase kinase/phosphatase, at 1,348,705 to 1,350,540
_RS06315
ABZR87_RS06320: ABZR87_RS06320 - isovaleryl-CoA dehydrogenase, at 1,350,699 to 1,351,880
_RS06320
ABZR87_RS06325: ABZR87_RS06325 - MerR family DNA-binding transcriptional regulator, at 1,352,057 to 1,352,554
_RS06325
ABZR87_RS06330: ABZR87_RS06330 - MBL fold metallo-hydrolase, at 1,352,739 to 1,353,818
_RS06330
Group
Condition
ABZR87
_RS06310
ABZR87
_RS06315
ABZR87
_RS06320
ABZR87
_RS06325
ABZR87
_RS06330
carbon source
Trans-2-methyl-2-butenoic (C)
-1.2
-4.2
-3.0
-0.2
+0.2
carbon source
Trans-2-methyl-2-butenoic (C)
-1.0
-3.9
-2.6
-0.3
+0.1
carbon source
Octanoic (C)
-0.9
-2.7
-0.4
-2.3
+0.3
carbon source
Octanoic (C)
-0.2
-2.9
+0.1
-2.2
-0.2
carbon source
Pimelic (C)
-0.3
-4.6
+0.0
-0.3
+0.1
carbon source
Beta-alanine (C)
-0.0
-4.3
-0.0
-0.3
-0.1
carbon source
Azelaic (C)
-0.3
-3.8
-0.2
-0.7
+0.3
carbon source
Beta-alanine (C)
-0.1
-4.1
-0.1
-0.3
+0.0
carbon source
Pimelic (C)
+0.3
-4.2
+0.1
-0.4
+0.2
carbon source
Sebacic (C)
-0.8
-1.1
-0.1
-1.3
-0.5
soil
soil sample 5; outgrowth in LB
-0.4
-2.5
-0.3
-0.2
+0.0
carbon source
Pimelic (C)
-0.2
-2.3
+0.0
-0.8
+0.1
carbon source
Pimelic (C)
-0.3
-2.6
-0.1
-0.1
+0.1
carbon source
Lauric (C)
+0.1
-1.5
-0.3
-1.2
+0.1
carbon source
Heptanoic (C)
-1.6
-0.1
+0.2
-1.0
-0.2
rhizosphere
rhizosphere sample 1; outgrowth in LB
-0.6
-1.5
-0.2
-0.1
-0.1
no plant control
Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.1
-1.3
-0.7
-0.4
+0.2
rhizosphere
rhizosphere EcoFAB sample 1; outgrowth in LB
+0.2
-0.3
-1.7
-0.4
-0.0
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.4
-1.2
-0.5
+0.0
-0.0
soil
soil sample 1; outgrowth in LB
-0.5
-1.2
-0.2
-0.3
-0.1
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.1
-1.3
-0.3
-0.3
-0.2
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.5
-1.2
-0.5
-0.2
+0.2
carbon source
L-Glutamic (C)
+0.2
-1.1
-0.7
-0.5
+0.1
soil
soil EcoFAB sample 2; outgrowth in LB
-1.1
-0.3
-0.5
-0.4
+0.4
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.2
-1.1
-0.3
-0.5
+0.4
root
root EcoFAB sample 2; outgrowth in LB
+0.3
-0.2
-0.9
-1.0
+0.2
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
+0.7
-1.4
-0.2
-0.6
-0.0
soil
soil EcoFAB sample 1; outgrowth in LB
-0.1
-0.5
-1.1
+0.2
+0.2
carbon source
butyrate (C)
+0.4
-1.0
+0.3
-0.7
-0.1
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.6
-1.1
-0.1
+0.6
-0.0
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