Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS06260 and ABZR87_RS06265 are separated by 700 nucleotidesABZR87_RS06265 and ABZR87_RS06270 are separated by 43 nucleotidesABZR87_RS06270 and ABZR87_RS06275 overlap by 4 nucleotidesABZR87_RS06275 and ABZR87_RS06280 are separated by 29 nucleotides ABZR87_RS06260: ABZR87_RS06260 - acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha, at 1,335,852 to 1,337,876 _RS06260 ABZR87_RS06265: ABZR87_RS06265 - biotin synthase BioB, at 1,338,577 to 1,339,656 _RS06265 ABZR87_RS06270: ABZR87_RS06270 - enoyl-CoA hydratase/isomerase family protein, at 1,339,700 to 1,340,494 _RS06270 ABZR87_RS06275: ABZR87_RS06275 - prolyl oligopeptidase family serine peptidase, at 1,340,491 to 1,341,435 _RS06275 ABZR87_RS06280: ABZR87_RS06280 - carboxyl transferase domain-containing protein, at 1,341,465 to 1,343,072 _RS06280
Group Condition ABZR87_RS06260 ABZR87_RS06265 ABZR87_RS06270 ABZR87_RS06275 ABZR87_RS06280
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -2.0 -0.1 -3.4 -0.1 -2.2
carbon source Sebacic (C) -0.4 -3.1 -1.0 -0.4 -2.1
soil soil EcoFAB sample 1; outgrowth in LB -1.7 -0.3 -1.5 -0.2 -2.1
carbon source Octanoic (C) -0.2 -3.5 -1.2 +0.4 -1.1
carbon source Octanoic (C) -0.4 -3.5 -0.3 +0.7 -2.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 -0.6 -1.5 +0.0 -0.9
carbon source Sebacic (C) -0.4 -1.5 -0.6 -0.5 -0.5
micoeukaryotes Dictyostellum sp.mixed culture-2 -0.3 -1.3 -1.0 -0.0 -0.9
carbon source Lauric (C) -0.5 -2.4 -0.1 +0.2 -0.7
root root EcoFAB sample 2; outgrowth in LB -0.5 -0.6 -0.8 -0.6 -0.9
root root sample 5; outgrowth in LB -0.6 -0.6 -1.4 -0.1 -0.6
root root sample 6; outgrowth in LB -0.3 -0.9 -1.4 +0.2 -0.8
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.6 -0.2 -0.7 -0.1 -1.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.5 -1.1 -0.0 -0.8
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.1 -0.5 -1.1 +0.4 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 -0.3 -0.7 -0.0 -1.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.7 -0.8 -0.1 -0.7
rhizosphere rhizosphere sample 2; outgrowth in LB -0.7 -0.4 -0.7 -0.1 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.1 -1.5 +0.0 -1.0
carbon source D-Xylose (C) -0.7 -0.3 -0.8 -0.2 -0.5
carbon source Azelaic (C) +0.0 -1.2 -0.0 -0.3 -0.9
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.7 -1.2 +0.2 -1.0
micoeukaryotes C.elegans, mixed culture-1 -0.2 -0.2 -0.9 -0.2 -0.8
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.2 -0.8 -0.4 +0.1 -0.9
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.0 +0.3 -0.3 -0.4 -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.4 -0.9 -0.2 -0.9
soil soil EcoFAB sample 2; outgrowth in LB -0.4 -0.3 -0.8 +0.2 -0.7
carbon source 4-Hydroxybenzoic Acid (C) -0.5 +0.5 -0.5 -0.4 -1.1
carbon source Dodecandioic (C) -0.0 -2.0 +0.6 -0.1 +0.2
carbon source Heptanoic (C) +0.3 -1.9 +0.4 +0.1 -0.1
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ABZR87_RS06260
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ABZR87_RS06265
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ABZR87_RS06275
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ABZR87_RS06280
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