Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS06240 and ABZR87_RS06245 are separated by 10 nucleotidesABZR87_RS06245 and ABZR87_RS06250 are separated by 22 nucleotidesABZR87_RS06250 and ABZR87_RS06255 are separated by 1 nucleotidesABZR87_RS06255 and ABZR87_RS06260 are separated by 109 nucleotides ABZR87_RS06240: ABZR87_RS06240 - DUF1289 domain-containing protein, at 1,333,070 to 1,333,336 _RS06240 ABZR87_RS06245: ABZR87_RS06245 - YbaK/EbsC family protein, at 1,333,347 to 1,333,847 _RS06245 ABZR87_RS06250: ABZR87_RS06250 - hydroxymethylglutaryl-CoA lyase, at 1,333,870 to 1,334,799 _RS06250 ABZR87_RS06255: ABZR87_RS06255 - glyoxylate/hydroxypyruvate reductase A, at 1,334,801 to 1,335,742 _RS06255 ABZR87_RS06260: ABZR87_RS06260 - acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha, at 1,335,852 to 1,337,876 _RS06260
Group Condition ABZR87_RS06240 ABZR87_RS06245 ABZR87_RS06250 ABZR87_RS06255 ABZR87_RS06260
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -1.0 -5.1 -0.5 -2.0
soil soil EcoFAB sample 1; outgrowth in LB N.D. -0.4 -3.8 -0.1 -1.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.5 -0.9 -0.8 -1.0
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB N.D. -1.0 -0.9 +0.1 -0.8
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB N.D. -0.2 -1.4 -0.6 -0.2
rhizosphere rhizosphere sample 2; outgrowth in LB N.D. -0.7 -1.3 +0.3 -0.7
root root EcoFAB sample 1; outgrowth in LB N.D. -0.1 -1.8 -0.0 -0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.1 -0.4 -0.5 -1.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB N.D. -0.1 -1.7 +0.2 -0.6
carbon source D-Xylose (C) N.D. +0.0 -1.4 +0.1 -0.7
soil soil EcoFAB sample 2; outgrowth in LB N.D. +0.3 -1.6 -0.3 -0.4
no_plant_soil no_plant_soil sample 3; outgrowth in LB N.D. -0.1 -1.4 -0.4 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.0 -1.6 +0.0 -0.3
root root EcoFAB sample 2; outgrowth in LB N.D. +0.8 -2.1 +0.1 -0.5
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -0.2 -0.7 -0.6 -0.2
micoeukaryotes Dictyostellum sp.mixed culture-2 N.D. +0.1 -1.3 -0.0 -0.3
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.8 -0.8 -0.1 +0.3
root root sample 5; outgrowth in LB N.D. -0.9 -0.6 +0.9 -0.6
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.2 -1.1 +0.2 -0.3
carbon source Protocatechuic Acid (C) N.D. -0.4 +0.7 -0.7 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.7 -1.7 +0.8 -0.1
carbon source Octanoic (C) N.D. +0.1 +0.9 -0.6 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.8 +0.8 +0.9 -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. +0.3 -0.4 +1.7 -1.0
carbon source Octanoic (C) N.D. +0.1 +1.0 +0.3 -0.4
root root sample 6; outgrowth in LB N.D. +0.4 +0.8 +0.3 -0.3
carbon source Sebacic (C) N.D. -0.6 +2.2 +0.0 -0.4
carbon source Dodecandioic (C) N.D. -0.2 +1.5 +0.1 +0.0
carbon source Protocatechuic Acid (C) N.D. -0.1 +1.5 +0.3 -0.3
carbon source Dodecandioic (C) N.D. +0.3 +1.3 -0.1 -0.0
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ABZR87_RS06240
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ABZR87_RS06245
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ABZR87_RS06255
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ABZR87_RS06260
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