Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS06075 and ABZR87_RS06080 are separated by 147 nucleotidesABZR87_RS06080 and ABZR87_RS06085 are separated by 274 nucleotidesABZR87_RS06085 and ABZR87_RS06090 are separated by 12 nucleotidesABZR87_RS06090 and ABZR87_RS06095 overlap by 11 nucleotides ABZR87_RS06075: ABZR87_RS06075 - ABC transporter ATP-binding protein, at 1,297,523 to 1,298,581 _RS06075 ABZR87_RS06080: ABZR87_RS06080 - porin, at 1,298,729 to 1,299,796 _RS06080 ABZR87_RS06085: ABZR87_RS06085 - GntR family transcriptional regulator, at 1,300,071 to 1,300,793 _RS06085 ABZR87_RS06090: ABZR87_RS06090 - YoaK family protein, at 1,300,806 to 1,301,513 _RS06090 ABZR87_RS06095: ABZR87_RS06095 - amidohydrolase, at 1,301,503 to 1,303,341 _RS06095
Group Condition ABZR87_RS06075 ABZR87_RS06080 ABZR87_RS06085 ABZR87_RS06090 ABZR87_RS06095
root root sample 6; outgrowth in LB -0.6 -0.4 -0.3 -1.0 -0.3
rhizosphere rhizosphere sample 2; outgrowth in LB -0.7 +0.1 +0.1 -1.3 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.2 -0.0 -0.3 -0.6 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.3 +0.1 -0.1 -0.3 -0.6
root root sample 5; outgrowth in LB +0.0 -0.0 -0.8 -0.2 -0.3
soil soil EcoFAB sample 2; outgrowth in LB -0.2 -0.3 -0.0 -0.6 +0.0
soil soil EcoFAB sample 1; outgrowth in LB -0.4 -0.1 -0.4 -0.4 +0.3
carbon source Sebacic (C) +0.1 +0.2 -0.1 -0.8 -0.4
carbon source Octanoic (C) -0.8 +0.2 -0.3 -0.1 +0.1
nitrogen source nitrogen source nitrite 0.5mM -0.1 -0.2 -0.4 -0.1 -0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.1 -0.1 -0.1 -0.4 -0.1
nitrogen source nitrogen source Ammonium chloride 20mM -0.3 -0.1 -0.2 -0.2 -0.1
rhizosphere rhizosphere sample 9; outgrowth in LB -0.2 +0.2 -0.1 -0.6 -0.1
soil soil sample 2; outgrowth in LB -0.4 -0.1 -0.0 -0.4 +0.0
carbon source Protocatechuic Acid (C) -0.4 +0.0 -0.1 -0.3 +0.0
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.3 -0.0 -0.1 +0.1 -0.4
rhizosphere rhizosphere sample 6; outgrowth in LB -0.6 -0.1 -0.1 +0.1 +0.1
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.2 -0.1 -0.1 +0.5 -0.6
nitrogen source nitrogen source nitrate 5mM +0.3 -0.2 -0.1 -0.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.2 -0.3 +0.4 +0.0
nitrogen source nitrogen source nitrite 5mM +0.1 -0.2 -0.2 -0.3 +0.2
carbon source Octanoic (C) +0.2 +0.1 +0.1 -0.5 -0.2
root root EcoFAB sample 1; outgrowth in LB -0.1 -0.2 -0.2 +0.3 -0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.5 -0.1 -0.2 -0.5 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.0 +0.1 -0.6 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.3 -0.0 -0.1 +0.5 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.1 -0.3 -0.2 +0.5
carbon source Azelaic (C) -0.3 -0.2 -0.0 +0.6 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 -0.0 +0.2 +0.6 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.6 +0.3 -0.3 +0.4
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ABZR87_RS06075
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ABZR87_RS06080
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