Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	ABZR87_RS06030	ABZR87_RS06035	ABZR87_RS06040	ABZR87_RS06045	ABZR87_RS06050
rhizosphere	rhizosphere EcoFAB sample 1; outgrowth in LB	-5.0	-0.1	-0.0	+0.3	-0.4
nitrogen source	nitrogen source nitrate 5mM	-4.6	-0.2	-0.2	+0.1	-0.0
carbon source	Octanoic (C)	-4.7	-0.1	-0.3	+0.5	+0.1
in planta	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	-2.5	-0.1	+0.1	-0.2	-0.2
carbon source	Protocatechuic Acid (C)	-2.1	-0.1	-0.1	-0.3	+0.1
phage	Ra3_0.01	-2.3	+0.1	-0.3	-0.1	+0.2
no plant control	Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	-3.1	-0.2	-0.4	+1.3	-0.1
rhizosphere	rhizosphere sample 3; outgrowth in LB	-3.3	-0.0	+0.1	+0.6	+0.2
carbon source	Valeric (C)	-2.2	+0.1	-0.1	-0.1	-0.0
nitrogen source	nitrogen source nitrate 20mM	-2.3	-0.1	-0.1	+0.4	-0.0
carbon source	butyrate (C)	-1.9	+0.2	-0.1	-0.2	-0.1
carbon source	acetate (C)	-2.0	+0.1	-0.0	-0.2	-0.0
carbon source	Hexanoic (C)	-1.8	+0.2	+0.0	-0.4	-0.0
root	root sample 6; outgrowth in LB	-1.4	+0.1	-0.4	+0.3	-0.1
rhizosphere	rhizosphere sample 9; outgrowth in LB	-1.5	-0.1	-0.1	+0.3	+0.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	-1.8	-0.0	+0.5	+0.4	+0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.5	+0.0	+0.3	+0.7	-0.5
carbon source	Octanoic (C)	+1.0	+0.1	-0.3	-0.5	-0.2
micoeukaryotes	C.elegans, mixed culture-1	-1.6	-0.1	-0.1	+1.7	+0.2
micoeukaryotes	Dictyostellum sp.mixed culture-1	-0.6	+0.0	-0.1	+1.4	+0.2
soil	soil EcoFAB sample 2; outgrowth in LB	-0.7	-0.1	-0.1	+1.6	+0.1
no_plant_soil	no_plant_soil sample 3; outgrowth in LB	-0.1	+0.1	-0.3	+1.9	-0.2
micoeukaryotes	C.elegans, mixed culture-2	-0.4	+0.0	+0.1	+1.7	+0.2
in planta	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	+1.3	-0.3	-0.1	+0.6	+0.3
root	root EcoFAB sample 2; outgrowth in LB	-0.0	-0.3	+0.7	+1.5	+0.1
in planta	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB	+1.0	-0.1	-0.1	+1.1	+0.1
carbon source	L-Glutamic (C)	+1.7	-0.1	+0.0	+0.1	+0.4
no_plant_rhizosphere	no_plant_rhizosphere sample 3; outgrowth in LB	-1.2	-0.1	+0.0	+4.8	-0.2
no_plant_rhizosphere	no_plant_rhizosphere sample 2; outgrowth in LB	-1.0	+0.0	+0.1	+4.5	+0.2
no_plant_rhizosphere	no_plant_rhizosphere sample 1; outgrowth in LB	+0.4	-0.3	+0.2	+3.7	+0.2