Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS05855 and ABZR87_RS05860 are separated by 4 nucleotidesABZR87_RS05860 and ABZR87_RS05865 are separated by 19 nucleotidesABZR87_RS05865 and ABZR87_RS05870 are separated by 171 nucleotidesABZR87_RS05870 and ABZR87_RS05875 are separated by 42 nucleotides ABZR87_RS05855: ABZR87_RS05855 - NAD-dependent succinate-semialdehyde dehydrogenase, at 1,248,631 to 1,250,103 _RS05855 ABZR87_RS05860: ABZR87_RS05860 - homoserine kinase, at 1,250,108 to 1,251,103 _RS05860 ABZR87_RS05865: ABZR87_RS05865 - threonine synthase, at 1,251,123 to 1,252,535 _RS05865 ABZR87_RS05870: ABZR87_RS05870 - FAD-binding oxidoreductase, at 1,252,707 to 1,254,035 _RS05870 ABZR87_RS05875: ABZR87_RS05875 - glyoxylate/hydroxypyruvate reductase A, at 1,254,078 to 1,255,004 _RS05875
Group Condition ABZR87_RS05855 ABZR87_RS05860 ABZR87_RS05865 ABZR87_RS05870 ABZR87_RS05875
root root sample 5; outgrowth in LB -0.0 -0.6 -0.2 -0.1 -0.1
carbon source Octanoic (C) -0.1 -0.2 +0.1 -0.3 -0.4
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) -0.0 -0.0 -0.2 -0.2 -0.2
carbon source L-Glutamic (C) -0.0 -0.5 +0.1 -0.1 -0.0
carbon source Sebacic (C) +0.1 -0.2 -0.0 -0.2 -0.2
micoeukaryotes C.elegans, mixed culture-1 -0.1 -0.1 -0.2 -0.0 -0.1
rhizosphere rhizosphere sample 5; outgrowth in LB +0.0 -0.2 -0.1 -0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 -0.2 -0.1 -0.1 +0.1
carbon source Heptanoic (C) +0.0 -0.3 +0.1 -0.1 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.1 -0.1 -0.1 -0.3 +0.0
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 -0.2 -0.1 -0.2 +0.0
root root sample 6; outgrowth in LB -0.1 +0.3 -0.3 -0.1 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.1 -0.1 -0.0 -0.1
soil soil sample 4; outgrowth in LB +0.1 -0.3 -0.0 +0.1 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 -0.1 +0.1 -0.1 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.1 +0.1 -0.3 -0.2 +0.1
soil soil sample 5; outgrowth in LB +0.1 +0.1 -0.0 -0.2 -0.2
phage Ra1_0.1 -0.0 +0.2 -0.2 +0.1 -0.1
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.2 +0.1 -0.2 -0.1 -0.0
nitrogen source nitrogen source nitrate 20mM +0.1 +0.2 +0.1 +0.0 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.2 -0.2 +0.1 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.2 +0.1 +0.1 -0.0
root root sample 4; outgrowth in LB +0.2 -0.1 +0.2 -0.1 +0.2
carbon source Azelaic (C) +0.1 +0.2 +0.2 -0.0 -0.0
carbon source Lauric (C) +0.1 +0.1 +0.1 +0.1 -0.1
nitrogen source nitrogen source nitrate 5mM -0.0 +0.3 +0.0 -0.0 +0.1
root root EcoFAB sample 1; outgrowth in LB +0.2 +0.2 -0.1 +0.0 +0.1
nitrogen source nitrogen source nitrite 1mM +0.0 +0.2 +0.3 -0.1 +0.1
nitrogen source nitrogen source nitrite 5mM +0.1 +0.2 +0.2 +0.1 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.4 +0.0 +0.2 -0.1
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