Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS05830 and ABZR87_RS05835 are separated by 322 nucleotidesABZR87_RS05835 and ABZR87_RS05840 are separated by 19 nucleotidesABZR87_RS05840 and ABZR87_RS05845 overlap by 4 nucleotidesABZR87_RS05845 and ABZR87_RS05850 are separated by 87 nucleotides ABZR87_RS05830: ABZR87_RS05830 - porin, at 1,242,775 to 1,243,899 _RS05830 ABZR87_RS05835: ABZR87_RS05835 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,244,222 to 1,244,881 _RS05835 ABZR87_RS05840: ABZR87_RS05840 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 1,244,901 to 1,245,926 _RS05840 ABZR87_RS05845: ABZR87_RS05845 - four-carbon acid sugar kinase family protein, at 1,245,923 to 1,247,044 _RS05845 ABZR87_RS05850: ABZR87_RS05850 - PLP-dependent aminotransferase family protein, at 1,247,132 to 1,248,616 _RS05850
Group Condition ABZR87_RS05830 ABZR87_RS05835 ABZR87_RS05840 ABZR87_RS05845 ABZR87_RS05850
carbon source Octanoic (C) -0.3 -0.1 -0.9 -0.2 -0.3
carbon source Heptanoic (C) +0.1 -0.1 -0.3 -0.5 -0.2
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.1 -0.4 -0.5 +0.0 +0.0
carbon source Octanoic (C) +0.1 +0.2 -0.7 -0.5 +0.1
carbon source Heptanoic (C) +0.1 -0.2 -0.4 -0.2 -0.1
carbon source Sebacic (C) +0.1 -0.2 -0.4 -0.2 -0.1
nitrogen source nitrogen source nitrate 20mM -0.0 -0.2 -0.3 -0.3 +0.0
rhizosphere rhizosphere sample 7; outgrowth in LB -0.1 -0.4 +0.1 -0.3 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 -0.4 -0.3 +0.0 -0.2
rhizosphere rhizosphere sample 3; outgrowth in LB +0.0 +0.3 -0.4 -0.0 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.1 -0.3 -0.7 +0.3
nitrogen source nitrogen source nitrate 5mM +0.0 +0.0 -0.2 -0.3 +0.1
carbon source butyrate (C) +0.1 +0.2 -0.2 -0.2 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.1 +0.1 -0.3 +0.2 -0.1
root root sample 5; outgrowth in LB +0.0 +0.6 -0.3 -0.2 -0.2
root root EcoFAB sample 2; outgrowth in LB +0.3 -0.2 -0.0 -0.2 +0.1
rhizosphere rhizosphere sample 1; outgrowth in LB +0.1 +0.2 -0.2 -0.1 -0.1
nitrogen source nitrogen source nitrate 5mM +0.1 +0.2 -0.4 -0.1 +0.1
rhizosphere rhizosphere sample 2; outgrowth in LB +0.3 +0.1 -0.3 +0.0 -0.2
rhizosphere rhizosphere sample 6; outgrowth in LB +0.2 +0.1 -0.2 +0.3 -0.1
soil soil EcoFAB sample 1; outgrowth in LB -0.1 +0.3 +0.3 +0.0 -0.1
carbon source L-Glutamic (C) +0.1 +0.1 +0.4 -0.1 +0.1
root root EcoFAB sample 1; outgrowth in LB +0.2 -0.1 +0.1 +0.5 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.2 -0.2 +0.3 +0.1
carbon source Protocatechuic Acid (C) +0.2 +0.0 +0.4 -0.2 +0.2
root root sample 6; outgrowth in LB +0.2 +0.3 +0.5 -0.2 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.5 +0.4 -0.0 +0.2
carbon source D-Xylose (C) +0.1 +0.1 +0.2 +0.2 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 +0.0 +0.3 +0.6 +0.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.2 -0.1 +0.3 +0.2
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