Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS05825 and ABZR87_RS05830 are separated by 165 nucleotidesABZR87_RS05830 and ABZR87_RS05835 are separated by 322 nucleotidesABZR87_RS05835 and ABZR87_RS05840 are separated by 19 nucleotidesABZR87_RS05840 and ABZR87_RS05845 overlap by 4 nucleotides ABZR87_RS05825: ABZR87_RS05825 - low-specificity L-threonine aldolase, at 1,241,545 to 1,242,609 _RS05825 ABZR87_RS05830: ABZR87_RS05830 - porin, at 1,242,775 to 1,243,899 _RS05830 ABZR87_RS05835: ABZR87_RS05835 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,244,222 to 1,244,881 _RS05835 ABZR87_RS05840: ABZR87_RS05840 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 1,244,901 to 1,245,926 _RS05840 ABZR87_RS05845: ABZR87_RS05845 - four-carbon acid sugar kinase family protein, at 1,245,923 to 1,247,044 _RS05845
Group Condition ABZR87_RS05825 ABZR87_RS05830 ABZR87_RS05835 ABZR87_RS05840 ABZR87_RS05845
carbon source Octanoic (C) -0.4 -0.3 -0.1 -0.9 -0.2
micoeukaryotes Acanthamoeba sp., muxed culture-2 -0.2 -0.1 -0.4 -0.5 +0.0
nitrogen source nitrogen source nitrate 20mM -0.2 -0.0 -0.2 -0.3 -0.3
carbon source Sebacic (C) -0.2 +0.1 -0.2 -0.4 -0.2
nitrogen source nitrogen source nitrate 20mM -0.4 -0.1 -0.2 -0.3 +0.1
carbon source Octanoic (C) +0.1 +0.1 +0.2 -0.7 -0.5
micoeukaryotes Dictyostellum sp.mixed culture-1 -0.4 -0.0 +0.0 -0.3 +0.0
carbon source Heptanoic (C) +0.1 +0.1 -0.1 -0.3 -0.5
carbon source Heptanoic (C) +0.2 +0.1 -0.2 -0.4 -0.2
root root EcoFAB sample 2; outgrowth in LB -0.3 +0.3 -0.2 -0.0 -0.2
rhizosphere rhizosphere sample 7; outgrowth in LB +0.2 -0.1 -0.4 +0.1 -0.3
rhizosphere rhizosphere sample 5; outgrowth in LB -0.6 +0.1 +0.2 +0.1 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.2 +0.2 -0.4 -0.3 +0.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.3 +0.1 +0.1 -0.3 +0.2
carbon source butyrate (C) -0.1 +0.1 +0.2 -0.2 -0.2
root root sample 5; outgrowth in LB -0.3 +0.0 +0.6 -0.3 -0.2
rhizosphere rhizosphere sample 9; outgrowth in LB -0.6 +0.3 -0.0 +0.0 +0.2
nitrogen source nitrogen source nitrate 5mM +0.0 +0.1 +0.2 -0.4 -0.1
rhizosphere rhizosphere sample 6; outgrowth in LB -0.3 +0.2 +0.1 -0.2 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.1 +0.2 -0.2 +0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +1.0 +0.1 +0.1 -0.3 -0.7
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 -0.1 -0.1 +0.3 -0.0
carbon source Protocatechuic Acid (C) -0.1 +0.2 +0.0 +0.4 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.2 +0.5 +0.4 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.5 +0.2 -0.1 -0.1 +0.1
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.3 +0.2 -0.1 +0.3
root root EcoFAB sample 1; outgrowth in LB +0.0 +0.2 -0.1 +0.1 +0.5
root root sample 6; outgrowth in LB -0.1 +0.2 +0.3 +0.5 -0.2
carbon source L-Glutamic (C) +0.3 +0.1 +0.1 +0.4 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.1 -0.1 +0.0 +0.3 +0.6
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ABZR87_RS05825
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ABZR87_RS05830
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ABZR87_RS05840
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ABZR87_RS05845
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