Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS05580 and ABZR87_RS05585 are separated by 46 nucleotidesABZR87_RS05585 and ABZR87_RS05590 are separated by 600 nucleotidesABZR87_RS05590 and ABZR87_RS05595 are separated by 32 nucleotidesABZR87_RS05595 and ABZR87_RS05600 are separated by 127 nucleotides ABZR87_RS05580: ABZR87_RS05580 - diaminopimelate epimerase, at 1,186,158 to 1,187,039 _RS05580 ABZR87_RS05585: ABZR87_RS05585 - polyphosphate kinase 2 family protein, at 1,187,086 to 1,187,913 _RS05585 ABZR87_RS05590: ABZR87_RS05590 - orotate phosphoribosyltransferase, at 1,188,514 to 1,189,191 _RS05590 ABZR87_RS05595: ABZR87_RS05595 - exodeoxyribonuclease III, at 1,189,224 to 1,190,009 _RS05595 ABZR87_RS05600: ABZR87_RS05600 - N-acetyl-gamma-glutamyl-phosphate reductase, at 1,190,137 to 1,191,150 _RS05600
Group Condition ABZR87_RS05580 ABZR87_RS05585 ABZR87_RS05590 ABZR87_RS05595 ABZR87_RS05600
carbon source 4-Hydroxybenzoic Acid (C) -4.1 +0.0 -4.9 +0.3 -0.2
carbon source 3-Hydroxypropionate (C) -1.4 -0.0 -4.9 -0.1 +0.0
carbon source Protocatechuic Acid (C) -0.9 -0.0 -4.9 -0.3 -0.2
carbon source propionate (C) -1.3 -0.0 -4.9 -0.1 +0.1
carbon source 1,2-Propanediol (C) -1.1 -0.0 -5.0 +0.0 -0.1
carbon source propionate (C) -1.0 -0.0 -4.9 -0.1 -0.2
carbon source Octanoic (C) -2.1 -0.2 -2.8 -0.4 -0.5
carbon source Protocatechuic Acid (C) -1.2 -0.1 -4.3 -0.2 -0.3
carbon source D-Glucose (C) -0.9 -0.0 -4.9 -0.0 -0.2
carbon source Beta-alanine (C) -2.3 -0.0 -3.2 +0.0 -0.0
carbon source Lauric (C) -1.5 +0.0 -3.7 +0.0 -0.2
carbon source Trans-2-methyl-2-butenoic (C) -0.5 -0.0 -4.5 -0.1 -0.1
carbon source D-Galactose (C) -0.5 -0.0 -4.5 -0.2 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -2.6 -0.0 -2.4 -0.3 -0.0
carbon source succinate (C) -1.3 -0.0 -3.8 -0.1 -0.1
carbon source Pimelic (C) -0.1 -0.0 -4.8 +0.0 -0.2
carbon source Heptanoic (C) -0.6 -0.2 -3.6 -0.1 -0.6
carbon source Protocatechuic Acid (C) -0.9 +0.0 -4.1 -0.1 +0.0
carbon source Beta-alanine (C) -0.4 -0.0 -4.6 -0.1 -0.1
carbon source Sebacic (C) -1.0 -0.5 -1.9 -0.3 -1.3
carbon source Glycerol (C) -0.3 -0.1 -4.4 +0.0 -0.0
carbon source propionate (C) -0.9 +0.0 -3.6 -0.0 -0.2
carbon source Pimelic (C) +0.2 +0.0 -4.8 -0.0 -0.1
carbon source D-Galactose (C) -0.7 -0.1 -3.6 -0.1 -0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.5 -0.1 -2.8 -0.4 +0.0
carbon source Azelaic (C) -0.6 -0.1 -3.1 -0.1 -0.8
carbon source butyrate (C) -0.5 +0.1 -3.6 -0.1 -0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -1.6 -0.0 -2.8 +0.0 +0.4
carbon source Glycerol (C) +0.4 +0.1 -4.2 -0.1 -0.1
root root sample 6; outgrowth in LB -4.2 -0.1 +0.9 -0.0 +0.1
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ABZR87_RS05585
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