Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS05390 and ABZR87_RS05395 are separated by 227 nucleotidesABZR87_RS05395 and ABZR87_RS05400 overlap by 4 nucleotidesABZR87_RS05400 and ABZR87_RS05405 are separated by 191 nucleotidesABZR87_RS05405 and ABZR87_RS05410 are separated by 421 nucleotides ABZR87_RS05390: ABZR87_RS05390 - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 1,134,749 to 1,137,277 _RS05390 ABZR87_RS05395: ABZR87_RS05395 - Dam family site-specific DNA-(adenine-N6)-methyltransferase, at 1,137,505 to 1,138,308 _RS05395 ABZR87_RS05400: ABZR87_RS05400 - DGQHR domain-containing protein, at 1,138,305 to 1,140,638 _RS05400 ABZR87_RS05405: ABZR87_RS05405 - hypothetical protein, at 1,140,830 to 1,141,300 _RS05405 ABZR87_RS05410: ABZR87_RS05410 - HNH endonuclease signature motif containing protein, at 1,141,722 to 1,142,648 _RS05410
Group Condition ABZR87_RS05390 ABZR87_RS05395 ABZR87_RS05400 ABZR87_RS05405 ABZR87_RS05410
phage Ra1_0.1 N.D. -0.7 -0.7 -0.6 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.6 -0.1 -0.9 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.5 -0.2 -0.8 -0.1
carbon source Azelaic (C) N.D. -0.6 +0.0 -0.8 -0.1
carbon source Octanoic (C) N.D. -0.7 -0.2 -0.2 -0.3
phage Ra1_0.01 N.D. -0.5 -0.4 -0.4 -0.1
root root EcoFAB sample 2; outgrowth in LB N.D. -1.0 +0.1 -0.2 -0.2
phage Ra3_1 N.D. -0.5 -0.4 -0.4 +0.1
soil soil EcoFAB sample 2; outgrowth in LB N.D. -0.9 -0.0 -0.2 -0.0
soil soil EcoFAB sample 1; outgrowth in LB N.D. -0.1 -0.1 -0.9 -0.1
phage Ra3_0.1 N.D. -0.5 -0.4 -0.3 +0.1
in planta Plant=None; PlantTreatment=None; Sample=no_plant_control; GrowthSubstrate=agar_0.75vol%; Collection=direct (sample tracking unclear; do not publish) N.D. -0.7 -0.1 -0.1 -0.2
no_plant_soil no_plant_soil sample 2; outgrowth in LB N.D. -0.8 -0.0 -0.3 -0.0
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.7 -0.1 -0.4 +0.2
rhizosphere rhizosphere sample 1; outgrowth in LB N.D. -0.8 -0.0 -0.2 +0.0
carbon source Sebacic (C) N.D. -0.7 -0.2 -0.3 +0.2
carbon source Heptanoic (C) N.D. -0.4 +0.1 -0.6 -0.1
soil soil sample 1; outgrowth in LB N.D. -0.9 -0.1 +0.1 +0.0
soil soil sample 5; outgrowth in LB N.D. -1.0 +0.0 +0.2 +0.0
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB N.D. -0.6 +0.1 -0.2 -0.1
root root sample 5; outgrowth in LB N.D. -0.5 +0.2 -0.2 -0.2
carbon source Dodecandioic (C) N.D. -0.4 +0.2 -0.5 -0.0
soil soil sample 8; outgrowth in LB N.D. -0.8 -0.1 +0.3 -0.1
root root sample 6; outgrowth in LB N.D. -1.0 -0.0 +0.3 +0.1
carbon source 4-Hydroxybenzoic Acid (C) N.D. -0.6 -0.1 -0.1 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.7 -0.1 +0.1 +0.2
soil soil sample 3; outgrowth in LB N.D. -0.8 +0.1 +0.3 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.6 +0.1 +0.3 -0.1
rhizosphere rhizosphere sample 7; outgrowth in LB N.D. -0.8 -0.0 +0.2 +0.4
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB N.D. -0.5 +0.1 +0.0 +0.5
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ABZR87_RS05395
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