Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS05305 and ABZR87_RS05310 are separated by 568 nucleotidesABZR87_RS05310 and ABZR87_RS05315 are separated by 15 nucleotidesABZR87_RS05315 and ABZR87_RS05320 are separated by 2 nucleotidesABZR87_RS05320 and ABZR87_RS05325 are separated by 33 nucleotides ABZR87_RS05305: ABZR87_RS05305 - TetR family transcriptional regulator, at 1,116,283 to 1,116,954 _RS05305 ABZR87_RS05310: ABZR87_RS05310 - efflux RND transporter periplasmic adaptor subunit, at 1,117,523 to 1,118,794 _RS05310 ABZR87_RS05315: ABZR87_RS05315 - efflux RND transporter permease subunit, at 1,118,810 to 1,121,962 _RS05315 ABZR87_RS05320: ABZR87_RS05320 - efflux transporter outer membrane subunit, at 1,121,965 to 1,123,509 _RS05320 ABZR87_RS05325: ABZR87_RS05325 - DNA topoisomerase IB, at 1,123,543 to 1,124,634 _RS05325
Group Condition ABZR87_RS05305 ABZR87_RS05310 ABZR87_RS05315 ABZR87_RS05320 ABZR87_RS05325
carbon source Lauric (C) -0.7 -5.7 -5.8 -5.0 -0.5
carbon source Octanoic (C) -4.7 -0.4 -0.4 -4.2 -0.3
soil soil EcoFAB sample 1; outgrowth in LB -5.1 -1.3 -1.1 -2.4 -0.1
carbon source Octanoic (C) -4.3 -0.4 -0.7 -3.6 +0.1
root root EcoFAB sample 1; outgrowth in LB -4.5 -0.9 -0.8 -1.6 -0.1
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -4.9 -0.9 -0.9 -1.2 -0.0
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -5.4 -0.4 -0.4 -0.9 -0.0
soil soil EcoFAB sample 2; outgrowth in LB -5.4 -0.2 -0.2 -0.9 -0.1
no_plant_soil no_plant_soil sample 1; outgrowth in LB -5.9 -0.0 +0.1 -0.3 +0.1
root root EcoFAB sample 2; outgrowth in LB -4.2 -0.4 -0.3 -0.7 -0.2
no_plant_soil no_plant_soil sample 3; outgrowth in LB -5.5 +0.3 +0.3 +0.1 +0.0
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -4.5 +0.7 +0.8 +0.3 -0.1
carbon source Pimelic (C) -4.3 +0.7 +0.7 +0.8 -0.1
carbon source Pimelic (C) -3.6 +0.8 +0.7 +0.8 +0.1
carbon source propionate (C) -3.5 +0.8 +0.8 +0.7 +0.1
carbon source propionate (C) -3.4 +0.8 +0.9 +0.9 +0.1
carbon source D-Glucose (C) -3.4 +0.9 +1.0 +1.1 -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -3.3 +0.9 +1.0 +0.7 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -3.9 +1.7 +2.1 +1.5 -0.0
carbon source Sebacic (C) -4.9 +2.4 +2.4 +2.2 +0.2
carbon source Protocatechuic Acid (C) -2.6 +1.9 +1.9 +2.0 -0.1
carbon source Heptanoic (C) -5.0 +3.1 +2.9 +2.2 +0.4
carbon source Heptanoic (C) -4.5 +3.4 +3.1 +2.5 +0.3
carbon source Dodecandioic (C) -5.2 +3.6 +3.6 +2.6 +0.3
carbon source Protocatechuic Acid (C) -2.9 +2.5 +2.6 +2.6 +0.2
phage Ra3_1 -0.8 +2.0 +1.9 +3.0 -0.0
phage Ra1_0.1 -0.7 +1.9 +1.7 +3.1 +0.0
carbon source Dodecandioic (C) -3.9 +3.7 +3.7 +2.5 +0.3
carbon source Azelaic (C) -3.6 +3.4 +3.6 +3.5 +0.1
carbon source Sebacic (C) -4.7 +4.5 +4.8 +4.4 +0.3
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ABZR87_RS05305
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ABZR87_RS05310
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ABZR87_RS05320
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ABZR87_RS05325
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