Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS05290 and ABZR87_RS05295 are separated by 101 nucleotidesABZR87_RS05295 and ABZR87_RS05300 are separated by 108 nucleotidesABZR87_RS05300 and ABZR87_RS05305 overlap by 4 nucleotidesABZR87_RS05305 and ABZR87_RS05310 are separated by 568 nucleotides ABZR87_RS05290: ABZR87_RS05290 - class III extradiol ring-cleavage dioxygenase, at 1,112,859 to 1,113,749 _RS05290 ABZR87_RS05295: ABZR87_RS05295 - NAD(P)/FAD-dependent oxidoreductase, at 1,113,851 to 1,115,284 _RS05295 ABZR87_RS05300: ABZR87_RS05300 - patatin-like phospholipase family protein, at 1,115,393 to 1,116,286 _RS05300 ABZR87_RS05305: ABZR87_RS05305 - TetR family transcriptional regulator, at 1,116,283 to 1,116,954 _RS05305 ABZR87_RS05310: ABZR87_RS05310 - efflux RND transporter periplasmic adaptor subunit, at 1,117,523 to 1,118,794 _RS05310
Group Condition ABZR87_RS05290 ABZR87_RS05295 ABZR87_RS05300 ABZR87_RS05305 ABZR87_RS05310
soil soil EcoFAB sample 1; outgrowth in LB -0.6 -0.4 -0.3 -5.1 -1.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.9 +0.0 -0.1 -4.9 -0.9
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.2 -0.3 -0.1 -5.9 -0.0
soil soil EcoFAB sample 2; outgrowth in LB -0.4 -0.1 -0.0 -5.4 -0.2
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB -0.3 +0.0 -0.1 -5.4 -0.4
carbon source Lauric (C) +0.1 +0.1 +0.2 -0.7 -5.7
root root EcoFAB sample 1; outgrowth in LB -0.5 +0.4 -0.2 -4.5 -0.9
root root EcoFAB sample 2; outgrowth in LB -0.5 -0.2 -0.3 -4.2 -0.4
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.2 -0.0 -0.1 -5.1 +0.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.0 -0.1 +0.0 -5.5 +0.3
carbon source Octanoic (C) +0.1 +0.0 +0.1 -4.7 -0.4
carbon source Hexanoic (C) -0.0 -0.3 +0.1 -4.9 +0.3
soil soil sample 8; outgrowth in LB -0.2 -0.0 +0.1 -4.4 -0.1
soil soil sample 6; outgrowth in LB -0.0 -0.1 +0.1 -4.2 -0.2
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.4 -0.2 +0.0 -4.5 +0.7
carbon source Octanoic (C) +0.0 +0.4 -0.0 -4.3 -0.4
carbon source Hexanoic (C) -0.0 -0.0 -0.0 -4.2 +0.3
carbon source Pimelic (C) +0.1 +0.0 -0.1 -4.3 +0.7
carbon source adipate (C) -0.2 -0.0 +0.0 -3.9 +0.6
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.1 -0.3 -0.1 -3.9 +1.7
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.3 +0.2 +0.1 -3.3 +0.9
carbon source Sebacic (C) +0.1 +0.1 -0.0 -4.9 +2.4
carbon source Dodecandioic (C) +0.2 -0.2 +0.0 -5.2 +3.6
carbon source Heptanoic (C) +0.1 +0.1 +0.1 -5.0 +3.1
carbon source Protocatechuic Acid (C) -0.3 -0.1 -0.0 -2.6 +1.9
carbon source Protocatechuic Acid (C) -0.1 -0.1 -0.1 -2.9 +2.5
carbon source Heptanoic (C) +0.2 +0.3 +0.0 -4.5 +3.4
carbon source Azelaic (C) -0.3 +0.2 -0.0 -3.6 +3.4
carbon source Dodecandioic (C) +0.3 +0.2 +0.1 -3.9 +3.7
carbon source Sebacic (C) -0.3 +0.6 +0.4 -4.7 +4.5
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ABZR87_RS05290
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ABZR87_RS05295
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ABZR87_RS05305
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ABZR87_RS05310
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