Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS05285 and ABZR87_RS05290 are separated by 31 nucleotidesABZR87_RS05290 and ABZR87_RS05295 are separated by 101 nucleotidesABZR87_RS05295 and ABZR87_RS05300 are separated by 108 nucleotidesABZR87_RS05300 and ABZR87_RS05305 overlap by 4 nucleotides ABZR87_RS05285: ABZR87_RS05285 - D-2-hydroxyacid dehydrogenase family protein, at 1,111,799 to 1,112,827 _RS05285 ABZR87_RS05290: ABZR87_RS05290 - class III extradiol ring-cleavage dioxygenase, at 1,112,859 to 1,113,749 _RS05290 ABZR87_RS05295: ABZR87_RS05295 - NAD(P)/FAD-dependent oxidoreductase, at 1,113,851 to 1,115,284 _RS05295 ABZR87_RS05300: ABZR87_RS05300 - patatin-like phospholipase family protein, at 1,115,393 to 1,116,286 _RS05300 ABZR87_RS05305: ABZR87_RS05305 - TetR family transcriptional regulator, at 1,116,283 to 1,116,954 _RS05305
Group Condition ABZR87_RS05285 ABZR87_RS05290 ABZR87_RS05295 ABZR87_RS05300 ABZR87_RS05305
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.3 -0.2 -0.3 -0.1 -5.9
soil soil EcoFAB sample 1; outgrowth in LB -0.0 -0.6 -0.4 -0.3 -5.1
soil soil EcoFAB sample 2; outgrowth in LB +0.1 -0.4 -0.1 -0.0 -5.4
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB +0.1 -0.9 +0.0 -0.1 -4.9
no_plant_soil no_plant_soil sample 2; outgrowth in LB -0.2 -0.2 -0.0 -0.1 -5.1
no_plant_soil no_plant_soil sample 3; outgrowth in LB -0.1 +0.0 -0.1 +0.0 -5.5
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.5 -0.4 -0.2 +0.0 -4.5
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.3 -0.3 +0.0 -0.1 -5.4
carbon source Hexanoic (C) -0.1 -0.0 -0.3 +0.1 -4.9
carbon source Octanoic (C) -0.5 +0.1 +0.0 +0.1 -4.7
root root EcoFAB sample 2; outgrowth in LB +0.2 -0.5 -0.2 -0.3 -4.2
root root EcoFAB sample 1; outgrowth in LB -0.2 -0.5 +0.4 -0.2 -4.5
soil soil sample 8; outgrowth in LB -0.3 -0.2 -0.0 +0.1 -4.4
carbon source Dodecandioic (C) +0.6 +0.2 -0.2 +0.0 -5.2
no_plant_rhizosphere no_plant_rhizosphere sample 1; outgrowth in LB -0.2 -0.1 -0.3 -0.1 -3.9
soil soil sample 4; outgrowth in LB -0.3 -0.1 +0.0 +0.0 -4.2
soil soil sample 6; outgrowth in LB -0.2 -0.0 -0.1 +0.1 -4.2
carbon source Hexanoic (C) -0.1 -0.0 -0.0 -0.0 -4.2
carbon source Pimelic (C) +0.0 +0.1 +0.0 -0.1 -4.3
soil soil sample 1; outgrowth in LB -0.4 -0.3 -0.0 -0.0 -3.5
soil soil sample 2; outgrowth in LB -0.2 -0.0 -0.2 +0.0 -3.9
carbon source Sebacic (C) +0.5 +0.1 +0.1 -0.0 -4.9
soil soil sample 3; outgrowth in LB -0.1 -0.3 +0.0 +0.1 -3.8
carbon source Heptanoic (C) +0.5 +0.1 +0.1 +0.1 -5.0
soil soil sample 7; outgrowth in LB -0.2 -0.3 +0.1 +0.1 -3.7
carbon source Octanoic (C) +0.1 +0.0 +0.4 -0.0 -4.3
carbon source Sebacic (C) +0.2 -0.3 +0.6 +0.4 -4.7
carbon source Heptanoic (C) +0.6 +0.2 +0.3 +0.0 -4.5
carbon source Azelaic (C) +0.6 -0.3 +0.2 -0.0 -3.6
carbon source Dodecandioic (C) +0.7 +0.3 +0.2 +0.1 -3.9
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ABZR87_RS05285
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ABZR87_RS05290
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ABZR87_RS05300
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ABZR87_RS05305
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