Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS05270 and ABZR87_RS05275 are separated by 110 nucleotidesABZR87_RS05275 and ABZR87_RS05280 are separated by 860 nucleotidesABZR87_RS05280 and ABZR87_RS05285 are separated by 426 nucleotidesABZR87_RS05285 and ABZR87_RS05290 are separated by 31 nucleotides ABZR87_RS05270: ABZR87_RS05270 - DUF3617 family protein, at 1,107,229 to 1,107,690 _RS05270 ABZR87_RS05275: ABZR87_RS05275 - winged helix-turn-helix domain-containing protein, at 1,107,801 to 1,108,643 _RS05275 ABZR87_RS05280: ABZR87_RS05280 - phosphoenolpyruvate carboxykinase (GTP), at 1,109,504 to 1,111,372 _RS05280 ABZR87_RS05285: ABZR87_RS05285 - D-2-hydroxyacid dehydrogenase family protein, at 1,111,799 to 1,112,827 _RS05285 ABZR87_RS05290: ABZR87_RS05290 - class III extradiol ring-cleavage dioxygenase, at 1,112,859 to 1,113,749 _RS05290
Group Condition ABZR87_RS05270 ABZR87_RS05275 ABZR87_RS05280 ABZR87_RS05285 ABZR87_RS05290
micoeukaryotes Dictyostellum sp.mixed culture-2 +0.1 -1.4 +0.0 -1.0 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.7 -0.8 -0.1 +0.0 -0.4
micoeukaryotes Dictyostellum sp.mixed culture-1 +0.0 -1.1 -0.0 -0.6 +0.1
micoeukaryotes C.elegans, mixed culture-2 +0.3 -1.2 +0.0 -0.6 +0.0
micoeukaryotes C.elegans, mixed culture-1 +0.1 -1.0 -0.0 -0.6 +0.1
carbon source Valeric (C) -0.6 -0.2 +0.4 +0.2 -0.1
root root sample 4; outgrowth in LB -0.4 +0.6 -0.0 -0.1 -0.3
rhizosphere rhizosphere EcoFAB sample 1; outgrowth in LB -0.2 +0.7 -0.0 +0.1 -0.9
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB -0.2 +1.2 -0.1 -0.5 -0.4
no_plant_soil no_plant_soil sample 1; outgrowth in LB -0.2 +0.9 -0.2 -0.3 -0.2
soil soil sample 1; outgrowth in LB -0.0 +0.8 +0.0 -0.4 -0.3
carbon source Protocatechuic Acid (C) -0.5 +0.1 -0.1 +0.7 -0.1
carbon source Lauric (C) +0.1 +0.8 +0.2 -0.8 +0.1
no_plant_soil no_plant_soil sample 2; outgrowth in LB +0.2 +0.9 -0.0 -0.2 -0.2
rhizosphere rhizosphere sample 4; outgrowth in LB +0.2 +0.9 +0.0 -0.3 -0.0
carbon source Azelaic (C) -0.1 +0.1 +0.4 +0.6 -0.3
no_plant_soil no_plant_soil sample 3; outgrowth in LB +0.1 +1.1 -0.2 -0.1 +0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.4 +0.6 +0.3 +0.2 +0.2
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB +0.2 +1.3 -0.1 -0.2 -0.3
root root sample 5; outgrowth in LB +0.1 +1.7 +0.1 -0.4 -0.4
carbon source Sebacic (C) +0.0 +0.3 +0.6 +0.5 +0.1
carbon source Octanoic (C) -0.1 +0.7 +1.5 -0.5 +0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.1 +0.4 +0.3 +0.5 +0.3
carbon source Dodecandioic (C) -0.1 +0.4 +0.6 +0.7 +0.3
carbon source Sebacic (C) +0.3 +0.1 +1.5 +0.2 -0.3
carbon source propionate (C) -0.1 +0.1 +1.9 +0.0 +0.0
carbon source propionate (C) -0.0 +0.3 +2.0 -0.1 -0.0
carbon source Octanoic (C) +0.0 +1.0 +1.5 +0.1 +0.0
carbon source Heptanoic (C) +0.0 +0.2 +3.1 +0.5 +0.1
carbon source Heptanoic (C) +0.1 +0.6 +3.2 +0.6 +0.2
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