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Protein
Homologs
Fitness for 5 genes in
Ralstonia sp. UNC404CL21Col
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABZR87_RS05270 and ABZR87_RS05275 are separated by 110 nucleotides
ABZR87_RS05275 and ABZR87_RS05280 are separated by 860 nucleotides
ABZR87_RS05280 and ABZR87_RS05285 are separated by 426 nucleotides
ABZR87_RS05285 and ABZR87_RS05290 are separated by 31 nucleotides
ABZR87_RS05270: ABZR87_RS05270 - DUF3617 family protein, at 1,107,229 to 1,107,690
_RS05270
ABZR87_RS05275: ABZR87_RS05275 - winged helix-turn-helix domain-containing protein, at 1,107,801 to 1,108,643
_RS05275
ABZR87_RS05280: ABZR87_RS05280 - phosphoenolpyruvate carboxykinase (GTP), at 1,109,504 to 1,111,372
_RS05280
ABZR87_RS05285: ABZR87_RS05285 - D-2-hydroxyacid dehydrogenase family protein, at 1,111,799 to 1,112,827
_RS05285
ABZR87_RS05290: ABZR87_RS05290 - class III extradiol ring-cleavage dioxygenase, at 1,112,859 to 1,113,749
_RS05290
Group
Condition
ABZR87
_RS05270
ABZR87
_RS05275
ABZR87
_RS05280
ABZR87
_RS05285
ABZR87
_RS05290
micoeukaryotes
Dictyostellum sp.mixed culture-2
+0.1
-1.4
+0.0
-1.0
+0.2
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.7
-0.8
-0.1
+0.0
-0.4
micoeukaryotes
Dictyostellum sp.mixed culture-1
+0.0
-1.1
-0.0
-0.6
+0.1
micoeukaryotes
C.elegans, mixed culture-2
+0.3
-1.2
+0.0
-0.6
+0.0
micoeukaryotes
C.elegans, mixed culture-1
+0.1
-1.0
-0.0
-0.6
+0.1
carbon source
Valeric (C)
-0.6
-0.2
+0.4
+0.2
-0.1
root
root sample 4; outgrowth in LB
-0.4
+0.6
-0.0
-0.1
-0.3
rhizosphere
rhizosphere EcoFAB sample 1; outgrowth in LB
-0.2
+0.7
-0.0
+0.1
-0.9
no_plant_rhizosphere
no_plant_rhizosphere sample 3; outgrowth in LB
-0.2
+1.2
-0.1
-0.5
-0.4
no_plant_soil
no_plant_soil sample 1; outgrowth in LB
-0.2
+0.9
-0.2
-0.3
-0.2
soil
soil sample 1; outgrowth in LB
-0.0
+0.8
+0.0
-0.4
-0.3
carbon source
Protocatechuic Acid (C)
-0.5
+0.1
-0.1
+0.7
-0.1
carbon source
Lauric (C)
+0.1
+0.8
+0.2
-0.8
+0.1
no_plant_soil
no_plant_soil sample 2; outgrowth in LB
+0.2
+0.9
-0.0
-0.2
-0.2
rhizosphere
rhizosphere sample 4; outgrowth in LB
+0.2
+0.9
+0.0
-0.3
-0.0
carbon source
Azelaic (C)
-0.1
+0.1
+0.4
+0.6
-0.3
no_plant_soil
no_plant_soil sample 3; outgrowth in LB
+0.1
+1.1
-0.2
-0.1
+0.0
in planta
Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
-0.4
+0.6
+0.3
+0.2
+0.2
no_plant_rhizosphere
no_plant_rhizosphere sample 2; outgrowth in LB
+0.2
+1.3
-0.1
-0.2
-0.3
root
root sample 5; outgrowth in LB
+0.1
+1.7
+0.1
-0.4
-0.4
carbon source
Sebacic (C)
+0.0
+0.3
+0.6
+0.5
+0.1
carbon source
Octanoic (C)
-0.1
+0.7
+1.5
-0.5
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
+0.4
+0.3
+0.5
+0.3
carbon source
Dodecandioic (C)
-0.1
+0.4
+0.6
+0.7
+0.3
carbon source
Sebacic (C)
+0.3
+0.1
+1.5
+0.2
-0.3
carbon source
propionate (C)
-0.1
+0.1
+1.9
+0.0
+0.0
carbon source
propionate (C)
-0.0
+0.3
+2.0
-0.1
-0.0
carbon source
Octanoic (C)
+0.0
+1.0
+1.5
+0.1
+0.0
carbon source
Heptanoic (C)
+0.0
+0.2
+3.1
+0.5
+0.1
carbon source
Heptanoic (C)
+0.1
+0.6
+3.2
+0.6
+0.2
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