Fitness for 5 genes in Ralstonia sp. UNC404CL21Col

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500 ntABZR87_RS05105 and ABZR87_RS05110 are separated by 100 nucleotidesABZR87_RS05110 and ABZR87_RS05115 are separated by 157 nucleotidesABZR87_RS05115 and ABZR87_RS05120 are separated by 26 nucleotidesABZR87_RS05120 and ABZR87_RS05125 are separated by 214 nucleotides ABZR87_RS05105: ABZR87_RS05105 - zinc metallochaperone GTPase ZigA, at 1,075,308 to 1,076,612 _RS05105 ABZR87_RS05110: ABZR87_RS05110 - ABC transporter substrate-binding protein, at 1,076,713 to 1,078,314 _RS05110 ABZR87_RS05115: ABZR87_RS05115 - ATP-dependent protease subunit HslV, at 1,078,472 to 1,079,008 _RS05115 ABZR87_RS05120: ABZR87_RS05120 - ATP-dependent protease ATPase subunit HslU, at 1,079,035 to 1,080,366 _RS05120 ABZR87_RS05125: ABZR87_RS05125 - hypothetical protein, at 1,080,581 to 1,081,195 _RS05125
Group Condition ABZR87_RS05105 ABZR87_RS05110 ABZR87_RS05115 ABZR87_RS05120 ABZR87_RS05125
carbon source Octanoic (C) -2.8 +0.2 -1.7 -0.8 -0.4
carbon source 4-Hydroxybenzoic Acid (C) -1.5 -0.0 -1.6 -1.4 -0.5
carbon source Lauric (C) -0.9 -0.0 -0.8 -1.3 +0.0
carbon source Heptanoic (C) -0.6 +0.0 -0.9 -0.9 -0.0
carbon source Octanoic (C) -1.5 +0.2 -0.8 -0.6 +0.3
root root EcoFAB sample 1; outgrowth in LB -0.3 +0.1 -0.9 -0.7 -0.3
soil soil EcoFAB sample 2; outgrowth in LB -0.3 +0.0 -0.5 -1.1 +0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.3 +0.1 -1.7 -0.2 -0.3
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.6 +0.1 -1.1 -0.3 +0.2
carbon source Dodecandioic (C) -1.0 +0.1 -0.5 -0.3 -0.1
soil soil EcoFAB sample 1; outgrowth in LB -0.5 +0.1 -0.8 -0.3 -0.2
nitrogen source nitrogen source nitrite 1mM -0.3 -0.1 -0.6 -0.4 -0.4
carbon source Heptanoic (C) -0.2 +0.0 -0.7 -0.7 +0.0
root root EcoFAB sample 2; outgrowth in LB -0.1 +0.1 -0.4 -1.1 -0.0
rhizosphere rhizosphere EcoFAB sample 2; outgrowth in LB +0.0 +0.0 -0.5 -1.0 -0.0
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.3 -1.0 -0.6 -0.1
nitrogen source nitrogen source nitrate 20mM -0.6 +0.1 -0.2 -0.5 -0.1
carbon source Sebacic (C) -1.4 +0.1 -0.1 +0.4 -0.1
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.0 -0.6 -0.5 +0.5
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.0 +0.6 -0.8 -0.5 +0.1
nitrogen source nitrogen source nitrite 0.5mM -0.4 +0.3 -0.5 +0.5 -0.2
soil soil sample 9; outgrowth in LB +0.4 +0.2 -0.3 -0.5 +0.2
in planta Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB +0.1 +0.0 +0.8 -0.8 -0.1
carbon source L-Glutamic (C) +0.1 -0.1 -0.4 +1.1 -0.4
no plant control Plant=None; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB -0.2 +0.3 -0.4 +1.2 +0.1
root root sample 6; outgrowth in LB +0.3 -0.1 +1.1 +0.4 -0.3
phage Ra3_1 -0.4 -0.2 +1.1 +1.1 -0.0
no_plant_rhizosphere no_plant_rhizosphere sample 2; outgrowth in LB -0.4 +0.3 +1.1 +0.5 +0.1
no_plant_rhizosphere no_plant_rhizosphere sample 3; outgrowth in LB +0.4 +0.1 +0.8 +0.5 -0.1
phage Ra1_0.1 +0.2 -0.3 +1.0 +1.1 +0.1
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ABZR87_RS05110
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